RNA id: TU190279


Basic Information

Item Value
RNA id TU190279
length 528
lncRNA type inter_gene
GC content 0.59
exon number 2
gene id G151167
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 18644869 ~ 18646177 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgtgcatctctctctctagatGATCAGTTTCACTTCCTGTGTACCTGGGTGAGGCCCATGCTCTTGTTGACGTTCTCGGAGAGATAGATCATGTCTCCGTCCTCCGAcagcaccaggaggaacccgtCCAGGGCCTTGAGATAGAAGCCATTCAGCTGGGAATCCAATTCGGGCTCCTCCTCCAGTGGACTCACCTGAGCCGAGCAGCTTCCTCATGCGCAGGTAGCTGATAGTCAGTCTCATGATGGAGGCCTTGTCCAGGTGCGAGGTGACGTTGTGCGGCAGAGGCAGCTGGTGCGCCAGCTCGTAGAACACCTCCGACTCCTTGCTGCGCCGGCATCGTGCCGCGTCCCGGGACTTCTCTTTCCTGCGCTCCGAGCTGACCCTGCAGGGATCGGGAGTGGGGTTAGGGCCGTAGTCGGGGTGCAGGGACACAGACTGGGATGGAGTGTGCATCCCTGGCTGTGCGGTGCGGGAGCAGGCTGgtagtcaatcagtcagtcaggcagtgttgtgtgtgtttctgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190259 lncRNA downstream 60756 18583408 ~ 18584113 (-) True G151150
TU190240 lncRNA downstream 79154 18494649 ~ 18565715 (-) True G151133
TU190227 lncRNA downstream 122079 18449544 ~ 18522790 (-) True G151122
TU190224 lncRNA downstream 191669 18437283 ~ 18453200 (-) True G151119
TU190156 lncRNA downstream 270772 18373798 ~ 18374097 (-) True G151071
TU190327 lncRNA upstream 145198 18791375 ~ 18824668 (-) True G151198
TU190356 lncRNA upstream 210123 18856300 ~ 18856497 (-) True G151218
TU190486 lncRNA upstream 342898 18989075 ~ 18992844 (-) True G151291
TU190615 lncRNA upstream 752545 19398722 ~ 19400093 (-) True G151393
TU190641 lncRNA upstream 835151 19481328 ~ 19483307 (-) True G151416
AMCG00000582 mRNA downstream 42532 18601885 ~ 18602337 (-) True AMCG00000582
AMCG00000576 mRNA downstream 75735 18566365 ~ 18569134 (-) True AMCG00000576
AMCG00000575 mRNA downstream 111028 18525627 ~ 18533841 (-) True AMCG00000575
AMCG00000574 mRNA downstream 129501 18512046 ~ 18515368 (-) True AMCG00000574
AMCG00000554 mRNA downstream 219456 18420002 ~ 18425413 (-) True AMCG00000554
AMCG00000570 mRNA upstream 101873 18748050 ~ 18755308 (-) True AMCG00000570
AMCG00000589 mRNA upstream 128805 18774982 ~ 18804311 (-) True AMCG00000589
AMCG00000588 mRNA upstream 178724 18824901 ~ 18831169 (-) True AMCG00000588
AMCG00000590 mRNA upstream 187524 18833701 ~ 18853270 (-) True AMCG00000590
AMCG00000592 mRNA upstream 210759 18856936 ~ 18859417 (-) True AMCG00000592
TU190180 other downstream 229028 18415522 ~ 18415841 (-) True G151090
TU190179 other downstream 230311 18414055 ~ 18414558 (-) True G151089
TU190178 other downstream 231404 18412840 ~ 18413465 (-) True G151088
TU190177 other downstream 232344 18411488 ~ 18412525 (-) True G151087
TU189969 other downstream 635019 18007096 ~ 18009850 (-) False AMCG00000539
TU190562 other upstream 687800 19333977 ~ 19336732 (-) False AMCG00000599
TU190711 other upstream 997773 19643950 ~ 19646475 (-) False AMCG00000618
TU190879 other upstream 1985912 20632089 ~ 20634946 (-) True G151593
TU190947 other upstream 2100494 20746671 ~ 20747321 (-) False AMCG00000635
TU191039 other upstream 2280572 20926749 ~ 20935429 (-) True AMCG00000653

Expression Profile