RNA id: TU190879


Basic Information

Item Value
RNA id TU190879
length 711
RNA type TUCP
GC content 0.63
exon number 3
gene id G151593
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 20632089 ~ 20634946 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttttttgtgtccaAGGCAGGTATGCACCTTTAAATCCCAAGCTGCCCtaagtgaaagtgaaagcaaGGCAAGGTATCTGCACCGCGACTGGAGTTGCTCAGACACGGCCCCAGCGGAGCTCAGATCTCCACTAAAACCACAGTCGTGTAGAGGCGCCGGCCGATGACACACGGGCTCTGAATGGCCCAGCAGGCGCAGGGTGAAGTGGAGGCGGCCGAGGTCAGGGGCTCAGACGACCACACCGCCACAACCGTCCCCGCGACAGAGGCTCCCGGACAGGACGCGCCGGAGGATGGTGGGGGCCAGGCGGACGGGCTCGGGTTCGAGAGACCACGGGGGGTCCTGGGGAAGGTGAGGAGGAGCTTCAGGGAGAGTTTCCGCAAGGCGGCGCAGGCGACCAGCCCCACCGGCCTGCTCCCTTTCCGCAGGAGGTCGAAGGACGAGGGAGCCGACCGTCACAGGCCCGATGAGGAAGACTCTGTCTCCAAGACGGGGTCGCAGCCCCCGGACTCCCCAAgtcaaaggtcaggaGGACCCCACAGCCCTGAGGCCACCTCTCCCTTCAAGAAGTATGGGCGCTTCAGCTTGAAGGCCCGGGTGGAGAATGGCAGCCCCTCGCCAGACCCCCAGCCGCCCTCCACACCGAACTCAGGTACTGCACCGAAACTGAGCTGCATACATTTCCAAACCGTCTCTAAAACACATGGCTGT

Function

GO:

id name namespace
GO:0002011 morphogenesis of an epithelial sheet biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0090504 epiboly biological_process
GO:0001702 gastrulation with mouth forming second biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190684 lncRNA downstream 1008702 19621137 ~ 19623387 (-) True G151447
TU190685 lncRNA downstream 1008702 19621137 ~ 19623387 (-) False G151447
TU190682 lncRNA downstream 1013021 19612250 ~ 19619068 (-) True G151446
TU190681 lncRNA downstream 1017187 19614443 ~ 19614902 (-) False G151446
TU190651 lncRNA downstream 1101127 19530748 ~ 19530962 (-) False AMCG00000613
TU190976 lncRNA upstream 176594 20811540 ~ 20812254 (-) True G151678
TU191027 lncRNA upstream 279495 20914441 ~ 20914680 (-) True G151725
TU191028 lncRNA upstream 280295 20915241 ~ 20916217 (-) True G151726
TU191029 lncRNA upstream 281284 20916230 ~ 20917085 (-) True G151727
TU191045 lncRNA upstream 345127 20980073 ~ 20980345 (-) True G151739
AMCG00000631 mRNA downstream 4531 20620472 ~ 20627558 (-) True AMCG00000631
AMCG00000630 mRNA downstream 14363 20601669 ~ 20617726 (-) True AMCG00000630
AMCG00000627 mRNA downstream 82510 20545857 ~ 20549579 (-) True AMCG00000627
AMCG00000628 mRNA downstream 87362 20540008 ~ 20544727 (-) True AMCG00000628
AMCG00000629 mRNA downstream 92444 20531193 ~ 20539645 (-) True AMCG00000629
AMCG00000632 mRNA upstream 31688 20666634 ~ 20668013 (-) True AMCG00000632
AMCG00000636 mRNA upstream 99637 20734583 ~ 20741064 (-) True AMCG00000636
AMCG00000635 mRNA upstream 109433 20744379 ~ 20752657 (-) True AMCG00000635
AMCG00000644 mRNA upstream 135135 20770081 ~ 20791578 (-) True AMCG00000644
AMCG00000645 mRNA upstream 177334 20812280 ~ 20835927 (-) True AMCG00000645
TU190711 other downstream 985614 19643950 ~ 19646475 (-) False AMCG00000618
TU190562 other downstream 1295357 19333977 ~ 19336732 (-) False AMCG00000599
TU190180 other downstream 2216248 18415522 ~ 18415841 (-) True G151090
TU190179 other downstream 2217531 18414055 ~ 18414558 (-) True G151089
TU190178 other downstream 2218624 18412840 ~ 18413465 (-) True G151088
TU190947 other upstream 111725 20746671 ~ 20747321 (-) False AMCG00000635
TU191039 other upstream 291803 20926749 ~ 20935429 (-) True AMCG00000653
TU191083 other upstream 803321 21438267 ~ 21457795 (-) True G151771

Expression Profile