RNA id: AMCG00000689


Basic Information

Item Value
RNA id AMCG00000689
length 1125
RNA type mRNA
GC content 0.61
exon number 8
gene id AMCG00000689
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 131633 ~ 142509 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgttcatttcacGTTTGCGTGCCATTGATTTAAGCTGCATTGATTTCACGCAGGGAAGTCTCAGGGCGTCTCCTTACCAGATTGACGCAGACGTTGATGAGCGAGCGCAGGTGGGGGAGGAAGGAGATGATTGGCTGGCGCTGCAGGCCTACCAGGGGAAGACCTCCATCAGCACGGTGGGGACCTCCACGTCGGCGTACCGCCTCAGCCTGGCCACCATGTCGCGCTCCAACACCGGCACCGGCACCGTGTGGGAGCAGGACAGCCAGCCGTCTCACCAGGCTTCGCAGGACACACTCAGCCGCACGGATGAGGACGAGGAAGAGAATGACTCTGTGAGTATCCCCAGTGTGGTGAGTGAACACGATGCCTACGTGGCCAGTGTGATTGGCCGTCGCCGCTTCTCTAGTCATGTGACCAGTGTCTCCGCCCCACCAACAGAGCCCAAACTCAGCACCATGCTGCCCAGCCACAGGGTGGCGAGTGTCCAGAGCGAGCCCGGCCAGCAGAACCTCCTGTTGCAGCCGCCGCTGGGCAGGAAGAGGGGTCTCAGACAGCCTCGGCGCCCGTTGCTGTCCAGGCAGAAGACACAGACCGAGACACGTGGCCGTCCTGGCGCGCGACTCTCTACAACACGCCGGAGCATTCAGCCCAAAACCAAACCCCTAGAGCAGAAGAGGTCTGTGACCTTCACAGAGACAGAACCCGAGGTGGCCGTCGGGTCGCCCACAGCCACCAGTACAGAAAGTCCCTCTGAGAACAAGAACTTGAGTCCTGGGGCCAAACCTTCACCTGCTGCCTCTCCCTGCATCGTCACTGCCGACCTCCATACTGCCTCACCTATAAAGGTCGACACTGAAAACTcggagaagagagagaagacagaCCAGGGGAGCCTGTGCGGCAGcctctctcccgctccctctcctGTTCCCAATCCTCCTCCCACACTGCCCCCTCCTGTCCCGATGAGCCCCCCAGCGCTGGGCCCCCCCCAGCTGCCCGAGAGCCCAGAAAACGAGGAGACCTCTGCGCTGCTTCATCATGCAGACACAGTGCTGCACATCACGGAGGAGAACGGCACCGAAAACCCGCTCCTCTCCCAACTAGGCCTTTCACACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157308 lncRNA downstream 3970 121280 ~ 127663 (-) True G125515
TU157307 lncRNA downstream 7359 121280 ~ 124274 (-) False G125515
TU157282 lncRNA downstream 38978 92283 ~ 92655 (-) True G125498
TU157281 lncRNA downstream 40348 91051 ~ 91285 (-) True G125497
TU157403 lncRNA upstream 233311 375820 ~ 376770 (-) True G125578
TU157417 lncRNA upstream 267106 409615 ~ 410817 (-) True G125591
TU157449 lncRNA upstream 381012 523521 ~ 527501 (-) True G125622
TU157452 lncRNA upstream 455475 597984 ~ 598335 (-) True G125625
TU157474 lncRNA upstream 744645 887154 ~ 887476 (-) True G125642
AMCG00000686 mRNA downstream 11735 112162 ~ 119898 (-) True AMCG00000686
AMCG00000684 mRNA downstream 21109 100069 ~ 110524 (-) True AMCG00000684
AMCG00000685 mRNA downstream 41388 87659 ~ 90245 (-) True AMCG00000685
AMCG00000682 mRNA downstream 55297 66652 ~ 76336 (-) True AMCG00000682
AMCG00000688 mRNA upstream 3270 145779 ~ 192328 (-) True AMCG00000688
AMCG00000687 mRNA upstream 56507 199016 ~ 244177 (-) True AMCG00000687
AMCG00000690 mRNA upstream 164972 307481 ~ 329049 (-) True AMCG00000690
AMCG00000692 mRNA upstream 189714 332223 ~ 338261 (-) True AMCG00000692
AMCG00000693 mRNA upstream 197224 339733 ~ 348410 (-) True AMCG00000693
TU157359 other upstream 52135 194644 ~ 213612 (-) False AMCG00000687
TU157704 other upstream 1244334 1386843 ~ 1422410 (-) True G125814
TU157731 other upstream 1351473 1493982 ~ 1500661 (-) False AMCG00000719
TU157772 other upstream 1619753 1762262 ~ 1767476 (-) False AMCG00000731
TU157782 other upstream 1687038 1829547 ~ 1831310 (-) True AMCG00000741

Expression Profile