RNA id: AMCG00000690


Basic Information

Item Value
RNA id AMCG00000690
length 3873
RNA type mRNA
GC content 0.63
exon number 16
gene id AMCG00000690
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 307481 ~ 329049 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTGGCTCCAGCGCTGAAGACGCGGTCGTCTTTGAAACGCACTGGAGATGGGAGCCGGAATGGCGGCGCACAGGACACAGTTTCCGCACAGAGACACGTCATTGTGGCGCCACGCCCCGGCCACGCCCCCCGCCTGTGTCGCTGCTGCCGGGCCGCGCTGGCGGCAGTTGGAGTCGGACGGCGCCGAGACGGGAGGCGGGGAGACGGGCTGCACTTCCCGCTGTTAGCGTTTCTTTTCCCACATTTCTGTGGCCGGATCAGTGGTCGTTTGTCCCCTGAATGCCGCAGGATCCCCGCCGTGTCCGCCGTGAGGAGCGCTGTGCATGCAGACGTGTGGGCAGCTCCGGGCGCACGCTGAGGACACGGGACAGAGAGCATGGCTCCGGCGCTGACGGAGACGGCCACCGACGGACACGGGGTCCACTTGTCGTCTCCGCTGCCCTCTAGCACCATCAACGCCGACTCCGCCATGCTGGGGAAAGAGCCGGACGCCCAGCCGAAGCCGGCGGGGGATGGCACCGCACAGTCCGCCTGGCTCGACCGCAGCTTCCTGCGCTCCTCGGCCGTGTGTTCCCAGGAGGCTGCGGGGCTGGAGGACGCTGCCTATGTCTCCCCTGTGGCACCGGCCCCCGGGCTTTACAAATCGGTGCTCTCAAGCTCCAGCTCTCTGTTAAATATCCTCTCGCTCAACACAAACCGCAGTGTGGCAAAAACCCCAGCGCCGGCCTGGCCCAGAGGCCCCCACAAGGATCTCTTCAACCATTCTGGCGTTTTCCTCCTCTCGATATCCGAACGCAAGCGAAAGGGCGAGGCGGAGTGCGGTGAGAAGCCGAGCCCCCGCCCCGGCAGTGGCGCGAGGTCCGGCGCTGAGGGTGTGGTGAACCCGGTGAACAGGCTGAGCGACAGCGACTCGTCAGCCGGGGATCAAGCAGATAATGATATCCTGACGCCGACCAAAATAAACGGGTCTCTGGCGAGGGCCTTGCGCAGCAGCACGGCCAGAACCGGCTCCCCTGCCCCGCCCTGGGATCTGTGTGAGCCCGGCAGTCTACTGCTCACCGGCCGCGCAGCTGGGGAGGAAGCCAGAGCTAACGGCCagctgtgtcagtgcctcacCAAACACCGGACTCTGGTAAGTCGCGCCGGCGAGATACAGAAACGCCTGCAGACTCTTCTCGGGGAGCACGTAGCGCAGCACTGCAGTAAACAGCTTGAAGCGCTGCGAGAGCATCACTTCACAACGAGCCCGCCTGCCGCTGAGCGCACTTGTAGCCCTGTGGATAGGAGCTCCTTTGATCTGTCTGAGGCAGAGACGGGTCTGTGCGCAGGCATCGGCCGCCCCCACGCCGAGCCGAAGCCGGCCATGTTCTCCGGCTGCGTGTCAGAGGTCCGCAAGTTCGCCCGCTGTGCCAGAGCAGCGCTGTCGGGGGTCACCGAGATGCTGGACCCAGACGCCACGGACAGCAGCTCAGATGAAGAGTGGGACCCAGACCTGAAGCCGGGGGCAGAGACGGTGCCAGTTCCTCGCGGTTGCGAATGGAGATGGCTGACAGACAGGGCAGAGATCGGCAGCCGCTGGACGTGGCTTCAGGCCCGGGTGTCTGAGCTGGAATTTAAAATCCAGCAGCTCACTGACCTCCACAGACACCTGCACTCCACAAAGGGGAGAGTCATTCTGGCTGATTCGCAGCCCCTAACTGACAGGCTGGTTCAGCAGATGCTGTTGACAGAAAGCCCAGGTCTGCCCCGCGCTGCCAGAGACAACCGGACCCCTGCCGGGCCAAAGGATTGGTCCTCAGAGCGAGATTATGAAATGGAGCCGAGCAGCCCGACTCTCCTTCTGAGAAACATCGAGAGACAGAGCGCCCAGCTAACAGAAATCGTCAACAGCCTGATGCCTCCCTTCGGTTTCTCGCCCTCCTCCTCTCCGCTCTCAAAGCCCTGTAAATGGAAAGGACCGGCCGAGGCGGGCCCTCGCAGTGAACTGGGAGGCGGAGACGTGTTCTTCCGTGGCGGCACACGTGTGGCCCCTGAGCACCCAGCGAAGAAGAGGAGGGTCTGTAAGAAGAGTGCAAAGGCCCCGCACGTGAGCCATGCATGTGTGTCGGCGAGGACGCGGCCTCTGCGCACCTACCTCAAGCGCCGCCTCTTTGTGCTGGACGTGCCTCGCCAGGGGCTGTGCTtgagctcctccagctccaggGGGTCCGTGAGGGGGGGACTGATGGCGGCCGAGCTGGAGGCGTCGCTGCACCCCGTCCTGTCACTCGCCTCAGAtgttcctcttcctctccatcTCCAGACCGTCCTGCAAGGTGAAGACTGGGTGAACCAGCCGGTTCTGCCGTATCCGGGCGGGTCAGAGGAGGCCAGCTCTCCAGAGTTTGCCGGCGCTGGGCATCCGCTGGCAGATGACGCAGCCCTGTCTGATTGTACCCCTGCTGAAGAACATCGGGATTTACCTCCCGCCGGTCTGGGGACGTCTTGGCCGCTGGGACGAGGGGCCAAGAAGAGGAGGCGTGCCAGCGAGGCAGTGGAGGAGGAAGATCAGCCCCTGTCTCCGCTGATGGACGCCTCCTAttccctcccccccactccTGACGACAGCCCCTCGGACTTCGCTGCACCCAGAGCCGCGCAGGGATCCCGGCAGGCCGCACAGAGCTCGGCCAGGAGGCGTCTGCGCAGCGACTGTTTCTACGACATCGACGACATCGTCATCCCCGTGGCCCTGGCGGCCCCCGCGAAAGTGGAGCGGCTGCAGTACAGGGACATTCTCACCCCCAGCTGGCGTGTTGTTGACATGCAGGCGTCGGAGGGGAGGCTGGGCGACGCGCAGGAGTGTGAAGACATGTCAGACGAGGCGTTTCTGGGCCGGCATGTGATCTgtgagaagaaggagagagtgaagTGGCGCTTCTGGGACCAGAACCGGTGTcagaggaggagcagcagGGGCTCCAGCAGGAGCGCAGACGGCCCCCCGAGTGCTAACCCGCCGGACTGGGACTGCGAGGGCCGGACCGAGCCGCCCCCAGGAGAGCGAGAGGACTGGGCCTGGCCGGACCGCACACCCTGGGAGCGGAGGGCGTTTCCCCTGCAGCAGTGTGAGATGGAGGCCCTGCGCCCGGCGGAAGAGCAGTGGCCCCCTGCCTGCCCCCTCGGTGCGGGCCCCCTCTCCGGGACACCCCCGGTGGGGGACTCAGTGCTGCACACAGCGCAGGCACGCTGCTCGGGGAGCTGACAGTCGCTGGCGCTGACGTCTGGGATCTCAGAGCGCAGAATCCCATGGGGCTGCAGGACAGCGGAAGAGGGCCGTCTGGAGCCGGAGGGACGCAGAGGCAGTGAGGCCGGTGAGGCCAGTATGTTCTCACACGGACTCACTCTCCATGTGAAGAGTTTGGAATGCTCTCTCGCACCGGCGGCCGGCCTTGTTGGTCAGAGACGGTTTGGAGGGGCCTCTCAGGGGTGTGACCTCGTCTGCAGCGGTGGTGTTAGTGTCGTTGTTAGTGAAGCCTTTTCACAGAGTGTCAGTGTTGTTCGCTGCACAGAGCTTCGTCTCGACGGCCCGTTCCTTCACCGAGGAGAGAGAGGGCTTTGTGCAGCAGACGGGCCGGGACAGAGGTGTCGGCAGCATCCAAAACCATCCCGAAACCCAAATCACTGACCTCGGTACAGGAACACCTTTACACTGGTAATAACCGTAACAGCAACACTTGTTTGTCAGAGAGCTGCGCGGTTCTGTTGGCTcgtgggaaaacaaaacaacaacaacaaacacaacttcAGAGATCAGTTTCTTTTCAGTTCAATTTACACAAATTCAACAATATTATTCTGTCAAACAGAGTcgtagtttttttaaataaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157308 lncRNA downstream 179818 121280 ~ 127663 (-) True G125515
TU157307 lncRNA downstream 183207 121280 ~ 124274 (-) False G125515
TU157282 lncRNA downstream 214826 92283 ~ 92655 (-) True G125498
TU157281 lncRNA downstream 216196 91051 ~ 91285 (-) True G125497
TU157403 lncRNA upstream 46771 375820 ~ 376770 (-) True G125578
TU157417 lncRNA upstream 80566 409615 ~ 410817 (-) True G125591
TU157449 lncRNA upstream 194472 523521 ~ 527501 (-) True G125622
TU157452 lncRNA upstream 268935 597984 ~ 598335 (-) True G125625
TU157474 lncRNA upstream 558105 887154 ~ 887476 (-) True G125642
AMCG00000687 mRNA downstream 63304 199016 ~ 244177 (-) True AMCG00000687
AMCG00000688 mRNA downstream 115153 145779 ~ 192328 (-) True AMCG00000688
AMCG00000689 mRNA downstream 164972 131633 ~ 142509 (-) True AMCG00000689
AMCG00000686 mRNA downstream 187583 112162 ~ 119898 (-) True AMCG00000686
AMCG00000684 mRNA downstream 196957 100069 ~ 110524 (-) True AMCG00000684
AMCG00000692 mRNA upstream 3174 332223 ~ 338261 (-) True AMCG00000692
AMCG00000693 mRNA upstream 10684 339733 ~ 348410 (-) True AMCG00000693
AMCG00000691 mRNA upstream 25439 354488 ~ 366116 (-) True AMCG00000691
AMCG00000696 mRNA upstream 201992 531041 ~ 536858 (-) True AMCG00000696
AMCG00000697 mRNA upstream 213007 542056 ~ 544156 (-) True AMCG00000697
TU157359 other downstream 93869 194644 ~ 213612 (-) False AMCG00000687
TU157704 other upstream 1057794 1386843 ~ 1422410 (-) True G125814
TU157731 other upstream 1164933 1493982 ~ 1500661 (-) False AMCG00000719
TU157772 other upstream 1433213 1762262 ~ 1767476 (-) False AMCG00000731
TU157782 other upstream 1500498 1829547 ~ 1831310 (-) True AMCG00000741
TU157989 other upstream 2122819 2451868 ~ 2457883 (-) False G126017

Expression Profile