RNA id: AMCG00000691


Basic Information

Item Value
RNA id AMCG00000691
length 2820
RNA type mRNA
GC content 0.59
exon number 10
gene id AMCG00000691
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 354488 ~ 366116 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cccacatTAAGGGCTGAGGCTCTACTGGGGCATCACTGTGCGTTCAGAGCCATCAGACTGCACAATCTGCCGGCGCATACAGAGGTAAATACCCCGGGGGTAAACACTGGGGTAAACGAGCCAGAGCTGCACGGCACTGACGCAGCTGCGCACTTTGCAGACGCTCCCTGGATCGACGCGGCCGCGCTGGCAGATCTGGGAGACGCGAGGGCGAGTTTGCAGACGCTCCCTGGGACCGACGTGGCTGTGACTGTTGTCTGCGCGGAGAACCGGAGCCACGGCAGCGAGAGACTGAGAGATCCGAGCAGCTCGACCTCCCACGACGACCCCCACCAGCGGAACACTAGGCCTCGCCGCGCCGCCTTTGGCAGCTGCTCTcagggcagcagcagcatctcCTCGGCGCGCCGCTAGTCCGGATCGAGCCGCCCCCGTCCCGCCCGTGTCGCACCCAGAGCCCGGGCCGCCCCCCGCGGGAGCAGCATGGAGCAGAGAGCCGTGAAGAACCCGTACCGGGACTACGACGGCACCCCGGCCTGCACGCAGGGGCTGTTCGACCACCAGGGCCGGCTGACCCCAGATTTCGCCGGCCGGCTGAGCAGCAAGATCGGAGAGCTGATGGCGCTGATGGAGAGCGGGCTGAAGTCCGCGGACCCGGCCGACTGCACCACCTACACCGGCTGGGCAGgCATCGCGCTGCTCTACCTGCACCTGTACAACGTGTACGGAGAGCCCTCCTACCTGCAGCGGGCGCTGGAGCACGTGAACCGCAGTCTGCGCTGCCTGACGCGCCGCTGGGTCACCTTCCTGTGCGGCGACGCCGGGCCGCTGGCCGTGGCTGCGGTGGTTTACCACAAACTGCACCGCGAGCAGGAAGCCGACGACTGCCTGAGCCAGCTGCTGCGGCTGCACCAGTCGGTCGTCCAGGGCGACTCCCGGCTGCCGGACGAGCTGCTGTACGGCAGGGTGGGCTACCTGTACGCGCTGGTGTTCGTCAACCAGCAGTTTGAGCAGGAGAAGATCCCCATGCAGTACGTCCAGCAGGTCTGCGATGCGGTCCTGGCCTCCGGAGAGGGACTGTCCAGAAGGAGCCGGCACCAGGACACCAGCCCCCTGCTGTTCGAGTGGTACCAGGAATACTACGTGGGCGCGGCGCACGGCCTGGCCGGCATCTACTACTACATGATGCAGcCGGGCTTCGGCGTGGGTGATGAGCGTCTGCTCCGGCTGCTCAAGCCCAGCGTGGACTACGTGTTCCAGCTGCGCCTGCCCTCGGGGAACTACCCCCCCTGCATCGGCGACTCACGCGACCTGCTGGTGCACTGGTGCCACGGCTCACCCGGGGTCATCTACATGCTCATCCAGGCCTACAAGGTGTTCGGGGGGGAGCACTACCTGGCCGGCGCGATGCAGTGTGGAGAGGTGGTCTGGCAGAGGGGGCTGCTGAAGAAGGGCTACGGTCTGTGCCACGGCGCGGCCGGCAACGCCTACAGCTTCCTGGCGCTGTACAAGCTGACCCACGACCCCAAATACCTGTACCGAGCCTGCATGTTCGCAGTGTGGTGTCTGGACTACGGCAAGCATGGCTGCAGGACCCCGGacacccccttctctctcttcgAAGGTATGGCCGGGACCATCTACTTCCTGTCCGACCTGCTGCAGCCGCTGAAGTCCAGATTCCCGGCGTTTGAGATGTAAGCTCAGACGTGCTGCCGTGGATCCGGCCGGCCCAGCCCGGCGCTCTTCCACGCCTTCGTTCTGCACtcttgcttctgttttttgttttcggtcgttttgtttttttgtttttgttttttccagtcgTTCGATTTTGTTCGCTTCAAGTACAACGATACAGCGAGAGCCTGGAATCGGGGCGAGACGCGGGCCTCGCCGCTCCTGCCGCTAAAGAGAATCTCCCAGCCTCGGGGCCCCGGCCAGGCCTGGCCCGGGGGCGTCTGGGGCAGCTTGTCGCTTGTCTTCAGTGCCGCTGTGTGAATCACCGATGTCCAGCCGTGGCTAACCGTCACACTGCCATTAACTCCTGTCCACTCCGACTAAAGATGCATGCTTTAGGTCTGTCGTCATCCCATCAATCTCAAGTTATCTTACCTGATGCTGATTTACGTTCGTAACGAAACCTATGAAAATTGTCCTAGTGATGTCACAAAGGGGCGGGGCCTAATCCTTCCTTGATTCTTCGTGCTCAGAGTCCCGGGTCAGAGCGGCTCTATATAGAAATCtcagttgaaaaataaaaagcagagaaGTGTTCCTCCCCCCCGGCTGTGCATcgcccctccccccccccccgctgtgGAAGGCCGGTCCGATGGACAGTCCGTCCCAGCAGGTGGCGACACGGGCGCGTCTCTCCGGAGGCGGCTGGTTAGAGAGTTGGAGAGCGCGCGATCGGAAGGAAGCCTGGAAGACTTTTTAGAAAAGGAACCTGTAGACTCGTACTGACGGAGGTTTATTCTAGTCTATGATTttgtacaaaagaaaaaagaaaagacaaaaaaacttttcactcacttatttgaacacatttgaCTTTCTAAGGCACTCTAGGTATTGATCAACTCAGGCTTTGCGATGCTCTATTTGTAAATAACTGTTGTAGTTTTTGGTATGGGAGACAGACGATtcgatttttttctttttaagcttcatgttctgttatttttgaCTTTAATTTTCTATCAGTAATAGTAAGCAACGACAGAACTACTGATGCacttgtggtttttttttttttttttcatgtttgctACTTGACCGTGTATGTTCAGAACAATAAACTGACCTTGCACAGTA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0043295 glutathione binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K25210 LANCL1; glutathione transferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157308 lncRNA downstream 226825 121280 ~ 127663 (-) True G125515
TU157307 lncRNA downstream 230214 121280 ~ 124274 (-) False G125515
TU157282 lncRNA downstream 261833 92283 ~ 92655 (-) True G125498
TU157281 lncRNA downstream 263203 91051 ~ 91285 (-) True G125497
TU157403 lncRNA upstream 9704 375820 ~ 376770 (-) True G125578
TU157417 lncRNA upstream 43499 409615 ~ 410817 (-) True G125591
TU157449 lncRNA upstream 157405 523521 ~ 527501 (-) True G125622
TU157452 lncRNA upstream 231868 597984 ~ 598335 (-) True G125625
TU157474 lncRNA upstream 521038 887154 ~ 887476 (-) True G125642
AMCG00000693 mRNA downstream 6078 339733 ~ 348410 (-) True AMCG00000693
AMCG00000692 mRNA downstream 16227 332223 ~ 338261 (-) True AMCG00000692
AMCG00000690 mRNA downstream 25439 307481 ~ 329049 (-) True AMCG00000690
AMCG00000687 mRNA downstream 110311 199016 ~ 244177 (-) True AMCG00000687
AMCG00000688 mRNA downstream 162160 145779 ~ 192328 (-) True AMCG00000688
AMCG00000696 mRNA upstream 164925 531041 ~ 536858 (-) True AMCG00000696
AMCG00000697 mRNA upstream 175940 542056 ~ 544156 (-) True AMCG00000697
AMCG00000700 mRNA upstream 224729 590845 ~ 612323 (-) True AMCG00000700
AMCG00000698 mRNA upstream 277497 643613 ~ 647413 (-) True AMCG00000698
AMCG00000699 mRNA upstream 312898 679014 ~ 680483 (-) True AMCG00000699
TU157359 other downstream 140876 194644 ~ 213612 (-) False AMCG00000687
TU157704 other upstream 1020727 1386843 ~ 1422410 (-) True G125814
TU157731 other upstream 1127866 1493982 ~ 1500661 (-) False AMCG00000719
TU157772 other upstream 1396146 1762262 ~ 1767476 (-) False AMCG00000731
TU157782 other upstream 1463431 1829547 ~ 1831310 (-) True AMCG00000741
TU157989 other upstream 2085752 2451868 ~ 2457883 (-) False G126017

Expression Profile