RNA id: AMCG00000692


Basic Information

Item Value
RNA id AMCG00000692
length 1831
RNA type mRNA
GC content 0.60
exon number 11
gene id AMCG00000692
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 332223 ~ 338261 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCTATCaatgacttaaaaaaaataatgtgatatcttgtaacaattgtaagtgactccggataagggtgtctgctgagaaatagaGTAATAATGAAGGCAAATTCACGCACAGGCGCAGTCTGCGCTCCCTCCGGCAGGGGGCGGGCTGTCGCGCATGCTCAGTGCGGCCGTTGTGGCGCAGTTTGCAGACGCACAGTTGACTTTGACATGTTGGGCAGCTGCTCCTCCGCGGCGCTGAGGGCTGTGAATGTGGGGATCCGGGCCGGACGGGCGGCTCAGCTCAGGCTGGTGCACACCATGCGCCCCGAGCCCCACAGCGCCGCCAGCCTGATGGACATAGGAACGCGCAGGATCTTCTCCGAGGAGCACGACATCTTCCGGCAGAGCGTGCGCCGCTTCTTCCAGGAGGAGGTGGCCCCCTACCACACGCAGTGGGAGAAGGAGGGACAGGTGAGCCGGGAGGTGTGGAAGAAGGCCGGGGAGCAAGGACTGCTGGGGTTGTGCATCCCGGCCGAGCAAGGTGGCATCGGGGGGGACCTGCTGTCTGCGGCCATAGTGTGGGAGGAGCAGATGTATTCGAACTGCACGGGGCCGGGCTTCTCTCTGCACTCCGACATCGTGATGCCCTACATCAGCCACTATGGGACGCCCAGCCAGGTCCAGCGCTTCATCCCGCCCCTGGCCGCCGGCACCAGCATCGCCGCCATCGCCATGACGGAGCCGGGGGCCGGCAGTGATCTGCAGGGGGTGCGGACCTACGCCAAGAGGGATGGCAGTGACTGGATCCTCAACGGGAACAAGGTGTTCATCTCGAACGGCTGGATGAGCAacgtggtggtggtggtggcggtgACGGACCGCGAGGCGACCTCGGCAGCCCACGGGCTCAGCCTGTTCCTGGTGGAGGACGGCACCCCGGGCTTCATCAAAGGCCGTAAGCTGGAGAAGATCGGCCTGAAGGCGCAGGACACGGCGGAGCTCTTCTTCGAGGATGTCCGTCTCCCGGCCGATGCCCTCCTGGGGCCGGAGAACAAGGGCTTTTACTGCCTGATGGCGGAGCTGCTCCAGGAGCGACTGTTAATCGGCGCGTTGGCCATGGCCAGCTGCGAGTTCATGTTCGAGGAGACCCGGCGCTACGTCATGCAGAGGAAGGCCTTTGGAAAGACCATCGCACAGCTGCAGACTGTGCAGCACAAGATGGCGGAGCTCAAGACGGAGATTTGTGTCGGCCGGGCGTTCCTGGACAGCTGTCTGCAGCTGCACTGCGAGAAGCGGCTGGACTCCCCCACAGCCTCCATGGCCAAGTACTGGGCCTCCGACCTGCAGAACCGCGTGGCCACCGAGTGCGTGCAGCTGCACGGCGGCTGGGGATACATGTGGGAGTACCCCATTGCCAAGGCCTTCGTGGACTCGCGCGTCCAGCTCATCTACGGCGGCACCAACGAGATCATGAAGGAGCTGATTGGCCGCAGCATCGTCAGCCAGAAGTGAGGGACTGGGGTGTGACTTCATTGGGCCGGACTGGGAGGACTGGTGTGGAGTGCAGGAGTGCGTCTTCTCCCGGCTGTGGGGCTTTTGCTCAGTCACACATCTAGCTTCAGAGATCTGGTTTGCTGTGGAGCTTGGAGGAGGAACGCTGGACGGGTGGAGTAGTCTTCGCGTTTCTCCTCGGCCTTAATGACGTGTCCCTCAGCGTTTGATTTTGGGATTAAATTGCACTCAATTACTACACAATGTTACAGTGTATTCATGCCCTTTGAATGTCAAAACTCTGCTTCCATGtgtgtgaataaaaaatataattaaaaatgcaaaagatgGACAATATAA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0003995 acyl-CoA dehydrogenase activity molecular_function

KEGG:

id description
K00255 ACADL; long-chain-acyl-CoA dehydrogenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157308 lncRNA downstream 204560 121280 ~ 127663 (-) True G125515
TU157307 lncRNA downstream 207949 121280 ~ 124274 (-) False G125515
TU157282 lncRNA downstream 239568 92283 ~ 92655 (-) True G125498
TU157281 lncRNA downstream 240938 91051 ~ 91285 (-) True G125497
TU157403 lncRNA upstream 37559 375820 ~ 376770 (-) True G125578
TU157417 lncRNA upstream 71354 409615 ~ 410817 (-) True G125591
TU157449 lncRNA upstream 185260 523521 ~ 527501 (-) True G125622
TU157452 lncRNA upstream 259723 597984 ~ 598335 (-) True G125625
TU157474 lncRNA upstream 548893 887154 ~ 887476 (-) True G125642
AMCG00000690 mRNA downstream 3174 307481 ~ 329049 (-) True AMCG00000690
AMCG00000687 mRNA downstream 88046 199016 ~ 244177 (-) True AMCG00000687
AMCG00000688 mRNA downstream 139895 145779 ~ 192328 (-) True AMCG00000688
AMCG00000689 mRNA downstream 189714 131633 ~ 142509 (-) True AMCG00000689
AMCG00000686 mRNA downstream 212325 112162 ~ 119898 (-) True AMCG00000686
AMCG00000693 mRNA upstream 1472 339733 ~ 348410 (-) True AMCG00000693
AMCG00000691 mRNA upstream 16227 354488 ~ 366116 (-) True AMCG00000691
AMCG00000696 mRNA upstream 192780 531041 ~ 536858 (-) True AMCG00000696
AMCG00000697 mRNA upstream 203795 542056 ~ 544156 (-) True AMCG00000697
AMCG00000700 mRNA upstream 252584 590845 ~ 612323 (-) True AMCG00000700
TU157359 other downstream 118611 194644 ~ 213612 (-) False AMCG00000687
TU157704 other upstream 1048582 1386843 ~ 1422410 (-) True G125814
TU157731 other upstream 1155721 1493982 ~ 1500661 (-) False AMCG00000719
TU157772 other upstream 1424001 1762262 ~ 1767476 (-) False AMCG00000731
TU157782 other upstream 1491286 1829547 ~ 1831310 (-) True AMCG00000741
TU157989 other upstream 2113607 2451868 ~ 2457883 (-) False G126017

Expression Profile