RNA id: AMCG00000698


Basic Information

Item Value
RNA id AMCG00000698
length 306
RNA type mRNA
GC content 0.60
exon number 3
gene id AMCG00000698
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 643613 ~ 647413 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAGCGCTACACCTACAGCCCCGGAGCGATGGGCACCTCGATCCGCGAGGTGACGGGCTATGTGCTGGTGGCTCTGAACCAGTTTGACTACCTACCCCTGGAGAACCTGCGCATCATCCGCGGCACCAAGCTGTACGAGGACCGATACTCACTGGCCATCTTCCTCAACTACCGCAAGGATGGCAACTTCGGCCTGCGCCAGCTGGGCCTCAAGAACCTCACAGGCAGAGTATTAAATCTGCTGCACAGCTCCATCGCTGCGGAAAGCATCGCACGCCGAGGGTTCGCTGGATCAGCCGCCTGA

Function

GO:

id name namespace
GO:0018108 peptidyl-tyrosine phosphorylation biological_process
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway biological_process
GO:0016020 membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0004714 transmembrane receptor protein tyrosine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157452 lncRNA downstream 45278 597984 ~ 598335 (-) True G125625
TU157449 lncRNA downstream 116112 523521 ~ 527501 (-) True G125622
TU157417 lncRNA downstream 232796 409615 ~ 410817 (-) True G125591
TU157403 lncRNA downstream 266843 375820 ~ 376770 (-) True G125578
TU157308 lncRNA downstream 515950 121280 ~ 127663 (-) True G125515
TU157474 lncRNA upstream 239741 887154 ~ 887476 (-) True G125642
TU157532 lncRNA upstream 621818 1269231 ~ 1307353 (-) False G125685
TU157533 lncRNA upstream 622397 1269810 ~ 1307353 (-) False G125685
TU157535 lncRNA upstream 657170 1304583 ~ 1307353 (-) True G125685
TU157528 lncRNA upstream 657551 1304964 ~ 1307353 (-) False G125685
AMCG00000700 mRNA downstream 31290 590845 ~ 612323 (-) True AMCG00000700
AMCG00000697 mRNA downstream 99457 542056 ~ 544156 (-) True AMCG00000697
AMCG00000696 mRNA downstream 106755 531041 ~ 536858 (-) True AMCG00000696
AMCG00000691 mRNA downstream 277497 354488 ~ 366116 (-) True AMCG00000691
AMCG00000693 mRNA downstream 295203 339733 ~ 348410 (-) True AMCG00000693
AMCG00000699 mRNA upstream 31601 679014 ~ 680483 (-) True AMCG00000699
AMCG00000701 mRNA upstream 194858 842271 ~ 859811 (-) True AMCG00000701
AMCG00000703 mRNA upstream 488055 1135468 ~ 1148599 (-) True AMCG00000703
AMCG00000706 mRNA upstream 506897 1154310 ~ 1205897 (-) True AMCG00000706
AMCG00000707 mRNA upstream 622940 1270353 ~ 1276004 (-) True AMCG00000707
TU157359 other downstream 430001 194644 ~ 213612 (-) False AMCG00000687
TU157704 other upstream 739430 1386843 ~ 1422410 (-) True G125814
TU157731 other upstream 846569 1493982 ~ 1500661 (-) False AMCG00000719
TU157772 other upstream 1114849 1762262 ~ 1767476 (-) False AMCG00000731
TU157782 other upstream 1182134 1829547 ~ 1831310 (-) True AMCG00000741
TU157989 other upstream 1804455 2451868 ~ 2457883 (-) False G126017

Expression Profile