RNA id: AMCG00000700


Basic Information

Item Value
RNA id AMCG00000700
length 1122
RNA type mRNA
GC content 0.62
exon number 7
gene id AMCG00000700
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 590845 ~ 612323 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgatgatgattgtattgattgatgtGTATTGTGTCCGCGTGGTTCTGCTGCCTCCCTGTGCCGACGCTCTCTGCCGTGTGCTCCGTGACGCCCCCTGTCTGCGTCTTGTGTCCACAGAGATCCTCAACGGGGGGGTGTATGTGGACCAGAACAAGTTCCTGTGCCACGCCGACACCATCCACTGGCAGGACATTGTCAAGAACCCGCGGTCCGAGCTCCTGGTCGTGCCCACCAACAGCAGCACCGGATTGACGAAGACGGTGTGTGCGGAGCAGTGTGATGGCCGCTGTTTCGGGCCCTACGTGAGCGACTGCTGCCACCGGGAGTGTGCGGGGGGCTGCTCCGGACCCAAGGACACCGACTGCTTCGCGTGCACGAACTTCAATGACAGCGGCGCCTGCGTCACCCAGTGCCCCCAGCCCTTCGTGTACAACCCCACCACCTTCCAGCTGGAGCACAACCCCAAGGCCAAGTACACCTACGGGGCGTTCTGCGTCAAGAAGTGTCCACGTAAGGCCGTCCCGCAGCGTCCCGCCCACCCGTGTTCCCGGCGGTTCCTGAACATCCAGTCCTGGCCAGAGAACATGACTGACTTCAGCGTCTTCTCCAACCTGGCCACCATCGGAGGCCGCTCTCTGTACAGCGCCGGCAACGTCTACATCACCAACAACACCCAGCTGTGCTACTACAACACCGTCAACTGGACCAGCCTGTTCCGCACCGGAAACCAGAAGGCGCTGATCCGCAACAACCGCGAGCCGGGAGAGTGCATTGCAGAGAGGATGGTGTGTGACCCCCTGTGCTCTGACGACGGCTGCTGGGGTCCCGGCCCTGACCAGTGTCTGTTCTGCCGCTTCTTCAGCCGCGGGCGGACCTGCGTGGAATCCTGCAACCTCTACGAAGGGGATGTGCGAGAGTTTGCCAACGGCTCCGTGTGCCTGGAGTGCGACGCGCAGTGCGAGAAGGCGGAGAGCAACACGCTGACCTGCCACGGCCCGGTAAGACTCGCACCTGACGGCGTGGGGGGGAATCGATCACATCTGTGTCACGTGACTGTTAACCCTTTAGCGCCCGGCTTCACACCGctgtcttcctcttcctcctctccctctcgcaTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157449 lncRNA downstream 63344 523521 ~ 527501 (-) True G125622
TU157417 lncRNA downstream 180028 409615 ~ 410817 (-) True G125591
TU157403 lncRNA downstream 214075 375820 ~ 376770 (-) True G125578
TU157308 lncRNA downstream 463182 121280 ~ 127663 (-) True G125515
TU157307 lncRNA downstream 466571 121280 ~ 124274 (-) False G125515
TU157474 lncRNA upstream 274831 887154 ~ 887476 (-) True G125642
TU157532 lncRNA upstream 656908 1269231 ~ 1307353 (-) False G125685
TU157533 lncRNA upstream 657487 1269810 ~ 1307353 (-) False G125685
TU157535 lncRNA upstream 692260 1304583 ~ 1307353 (-) True G125685
TU157528 lncRNA upstream 692641 1304964 ~ 1307353 (-) False G125685
AMCG00000697 mRNA downstream 46689 542056 ~ 544156 (-) True AMCG00000697
AMCG00000696 mRNA downstream 53987 531041 ~ 536858 (-) True AMCG00000696
AMCG00000691 mRNA downstream 224729 354488 ~ 366116 (-) True AMCG00000691
AMCG00000693 mRNA downstream 242435 339733 ~ 348410 (-) True AMCG00000693
AMCG00000692 mRNA downstream 252584 332223 ~ 338261 (-) True AMCG00000692
AMCG00000698 mRNA upstream 31290 643613 ~ 647413 (-) True AMCG00000698
AMCG00000699 mRNA upstream 66691 679014 ~ 680483 (-) True AMCG00000699
AMCG00000701 mRNA upstream 229948 842271 ~ 859811 (-) True AMCG00000701
AMCG00000703 mRNA upstream 523145 1135468 ~ 1148599 (-) True AMCG00000703
AMCG00000706 mRNA upstream 541987 1154310 ~ 1205897 (-) True AMCG00000706
TU157359 other downstream 377233 194644 ~ 213612 (-) False AMCG00000687
TU157704 other upstream 774520 1386843 ~ 1422410 (-) True G125814
TU157731 other upstream 881659 1493982 ~ 1500661 (-) False AMCG00000719
TU157772 other upstream 1149939 1762262 ~ 1767476 (-) False AMCG00000731
TU157782 other upstream 1217224 1829547 ~ 1831310 (-) True AMCG00000741
TU157989 other upstream 1839545 2451868 ~ 2457883 (-) False G126017

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00000151 False 4470 mRNA 0.50 26 NC_007112.7 6817292 ~ 6925407 (+)