RNA id: TU157731


Basic Information

Item Value
RNA id TU157731
length 1611
RNA type TUCP
GC content 0.69
exon number 3
gene id AMCG00000719
representative False

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 1478740 ~ 1500661 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTTTCTCTGACGGAACCCAAACTGACAGATTGTAAACAGAATCAGGTGGCCCGGGGGCTGTGAGAGCTGTGTCAGGACTCCAACCCGTGTCTCTCTCTGGACGGTGTTGCCCTGCGCAGAGACGTCCTGCCCCCCGTGGACAGAGCAGAGGTGGACGGAGCCATGAAAGGTGCATGAAGCTATGAAGGGTCTGGGCACTAGTCTTCAGCCCCTGCCCCCAGACCAGCTCTCCTCCTAGGCCGCCTGGAATCGACTCTTTGCTgcgtctttgtttttgttgtgtctCCGATTCAGTCCCAGGACTCTATCGTAGGACTGTAGCGGTGTGGGGAGGGAAACGAGACGAACCAAGACAAACACTCCTTGCTTTTTGCCTTCCTGTTTGTGCCGGGGCAGAACACACAGCCCCCCGCCGCCCCCAGGAGACCATGTCTGGCCGGCTTCCCGCGTGAATCGGTCAGCAGATGCCCAGGCGTCTCCCGGCGCTGCAGTGAGAGGCCGTGCGGCTCCGTCGCTCCCGACACGCGGGGCGCTCGGCGGGGGGCCCGGTGAGCATTGGGGGGCAGGGAAGGGCAAAGATGGAGGGGCGGGAGGGTGAGAGCGTCAGCCCCGCCCTGGAAGTCACGGAGGACTTCCTGCACTGCTTCGATGGCCCCGTGGAGAACCGGCCCCCCGCGGCCCCGCCCAAGGGCTACGGGGCCCAGGAGGACGTCTCCCGTGGCATGCTGTGGGGGTTGCTGACCAAGGAGCAGCTGGGCCGGGGGCAGGAAGGGGGCAACTCCAACCGCCTGGAGTGGGCGGACCACAAGGGGGCGCCCTCCTTCAACATCTTCAGCATGTGCCACGGGCGGAGGAGCCGCGCCCGCTCCACCAACGACCTGGCCGCGCACGCCAAGGACGGCGGGGGGGGCGGCTTCAAGCGCGGGCACAGCCGGTCCCGCTCCGACGCCAACTACAGGTCCGTGACTGACAACGCCGCGCTGGACTGGAGCATGCCCGGCGCCAAGGACGGCCTGGGGAGAGGAGAGTCCAAGGAGTCGTCCCCCAGCCTGGTGAAGAAGGGCGAGCTGGAGCAGCGCGAGGGGGCGGTGGGGCGCTGGAGCTCCTGCCACGTGGAGCTGACGGCCTGCGAGCTACGGCTGTACGGGCTGGACGGCAGCGGCAACCGGCAGCTGTGCACGGCCTACTCCCTGTCGCACTGCCAGAGCGTGGCGGCGCCGCTGGGCCCGGATGGGCGCGTCCTGCAGGCGCTCTTCTTTAACAGCACCCGGCTGCAGCTGCGCGCGCCCTGCCAGTGGGAGGCGCTGGACTGGCGGCAGCGGCTGTGGGAGCGCGTCCTGGCCGTGCGGCCGGTGCAGCAGGGCGAGGACCCGGCGGTGGCGCCCTCTGCCCCAGCCCCGCGCCCGCCCTGCCGGCCCACCGCCCTGCCCCTGTTCACCCAGCGCTGCCAGGACGTGCTGAAGGCCGGGGTGCTGTACCAGCTAACCGACCTCAACAACTGGAAGGCCTTCACCTTCGTGCTGAGCAAGGCGCTGCTGCAGGCCTTCCCCACGGAGGGCCGGGGCCCGGTGTCGGAGCCGCTGCTGCGCCGTGCCCTGTCCGGCTGCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157574 lncRNA downstream 165334 1323503 ~ 1328648 (-) True G125719
TU157565 lncRNA downstream 174169 1319534 ~ 1319813 (-) True G125712
TU157564 lncRNA downstream 181728 1310839 ~ 1312254 (-) False AMCG00000710
TU157528 lncRNA downstream 186629 1304964 ~ 1307353 (-) False G125685
TU157743 lncRNA upstream 74700 1575361 ~ 1577346 (-) True G125845
TU157778 lncRNA upstream 321591 1822252 ~ 1827742 (-) True G125875
TU157974 lncRNA upstream 927280 2427941 ~ 2520220 (-) True G126005
TU157998 lncRNA upstream 960054 2460715 ~ 2462488 (-) True G126020
TU158015 lncRNA upstream 1057330 2557991 ~ 2558249 (-) True G126037
AMCG00000718 mRNA downstream 23537 1468697 ~ 1470445 (-) True AMCG00000718
AMCG00000716 mRNA downstream 43845 1448842 ~ 1450137 (-) True AMCG00000716
AMCG00000709 mRNA downstream 149080 1337948 ~ 1344902 (-) True AMCG00000709
AMCG00000711 mRNA downstream 165165 1318048 ~ 1328817 (-) True AMCG00000711
AMCG00000710 mRNA downstream 181574 1307821 ~ 1312408 (-) True AMCG00000710
AMCG00000720 mRNA upstream 6640 1507301 ~ 1510191 (-) True AMCG00000720
AMCG00000721 mRNA upstream 9795 1510456 ~ 1511147 (-) True AMCG00000721
AMCG00000728 mRNA upstream 78138 1578799 ~ 1589393 (-) True AMCG00000728
AMCG00000727 mRNA upstream 94156 1594817 ~ 1599675 (-) True AMCG00000727
AMCG00000726 mRNA upstream 108422 1609083 ~ 1611379 (-) True AMCG00000726
TU157704 other downstream 71572 1386843 ~ 1422410 (-) True G125814
TU157359 other downstream 1280370 194644 ~ 213612 (-) False AMCG00000687
TU157772 other upstream 261601 1762262 ~ 1767476 (-) False AMCG00000731
TU157782 other upstream 328886 1829547 ~ 1831310 (-) True AMCG00000741
TU157989 other upstream 951207 2451868 ~ 2457883 (-) False G126017
TU157991 other upstream 951207 2451868 ~ 2457883 (-) True G126017
TU157993 other upstream 951207 2451868 ~ 2457883 (-) False G126017

Expression Profile