RNA id: AMCG00000720


Basic Information

Item Value
RNA id AMCG00000720
length 1299
RNA type mRNA
GC content 0.65
exon number 7
gene id AMCG00000720
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 1507301 ~ 1510191 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGGCTCGGCAGCTCGAGGAACCCGGAGATCAGAGCCGAGGATACCGGGGACGCTGCGCTGGCACGGCCGCTCGAGGGCCCTGGCCCCGGCGCTGGGGCCGCCCGGCTCATTCTGCCCGGGGCTTCAGCAGCAACACAAACACCGTTACACAATCTGCACTTCCTGCAGAGGCCAGCGGTCGAGCTTCCTGTTTCCTTTGTGCAAAACATGAGGGACGTCTTTGACCTGGGCATGGAGAACCGGGACGCCACGGACGACCGCGTGACGGTGGAGGCGGCGGAGGCCATCAAGAAGCACAGCGTGGGCATCAAGTGCGCCACCATCACGCCGGACGAGAAGCGCGTGGAGGAGTTCCGGCTCAAGCAGATGTGGCGCTCGCCCAACGGCACCATCCGCAACATCCTGGGCGGCACGGTGTTCCGCGAGGCCATCATCTGCAAGAACATCCCGCGCCTCGTCTCCGGCTGGACCAAGCCCATCATCATCGGCCGGCACGCGCACGGGGACCAGTACAAAGCCACAGACTTCGTGGTTCCCGGGCCGGGTCGGTTGGAGATGATCTACACCCCCCAGGGCGGGGGGGCGCCGGTCAAGTACATTGTCCACGACTACCAAGGCGGCGGTGTGGCCCTGGGGATGTACAACACTGACGATTCGATCCGAGACTTCGCCCACAGCTCTTTCCAGATGGCCCTGAGCAAGAGCTGGCCGCTGTACCTCAGCACCAAGAACACCATCCTGAAGAAGTACGACGGGCGCTTCAAGGACATCTTCCAGGAGATCTACGAGAAAGCATTGGCAGAGCGTTGGCTGAGCGGTGCCGTGTGTCGCCACAGGGAGTACCGGGCGCAGTTTGAGGAGCGGGGCATCTGGTACGAGCACCGGCTCATCGACGACATGGTGGCCCAGGCCATGAAGTCCGAGGGAGGCTTCATCTGGGCCTGCAAGAACTACGACGGAGACGTGCAATCGGACTCGGTGGCCCAGGGCTACGGCTCCCTGGGCATGATGACCAGCGTGCTGATCTGTCCGGACGGACGCACGGTCGAGGCGGAGGCGGCGCACGGCACGGTGACCCGGCACTACAGGATGCACCAGCAGGGCAAGGAGACCTCGACCAACCCCATCGCCTCCATATTCGCCTGGACGCGGGGGCTGGCGCACCGGGCGGAGCTGGACGGGAACGCGGAGCTGCGCGTGTTCAGTGAGGCGCTGGAGGCCGTGTGTGTGGAGACCATCGAGGCCGGCTTCATGACCAAGGACCTGGCAGCCTGCATCAAGGGCCTGCCCAAGTGA

Function

GO:

id name namespace
GO:0006099 tricarboxylic acid cycle biological_process
GO:0006102 isocitrate metabolic process biological_process
GO:0051287 NAD binding molecular_function
GO:0004450 isocitrate dehydrogenase (NADP+) activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K00031 IDH1, IDH2, icd; isocitrate dehydrogenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157574 lncRNA downstream 178653 1323503 ~ 1328648 (-) True G125719
TU157565 lncRNA downstream 187488 1319534 ~ 1319813 (-) True G125712
TU157564 lncRNA downstream 195047 1310839 ~ 1312254 (-) False AMCG00000710
TU157528 lncRNA downstream 199948 1304964 ~ 1307353 (-) False G125685
TU157743 lncRNA upstream 65170 1575361 ~ 1577346 (-) True G125845
TU157778 lncRNA upstream 312061 1822252 ~ 1827742 (-) True G125875
TU157974 lncRNA upstream 917750 2427941 ~ 2520220 (-) True G126005
TU157998 lncRNA upstream 950524 2460715 ~ 2462488 (-) True G126020
TU158015 lncRNA upstream 1047800 2557991 ~ 2558249 (-) True G126037
AMCG00000719 mRNA downstream 6645 1478740 ~ 1500656 (-) True AMCG00000719
AMCG00000718 mRNA downstream 36856 1468697 ~ 1470445 (-) True AMCG00000718
AMCG00000716 mRNA downstream 57164 1448842 ~ 1450137 (-) True AMCG00000716
AMCG00000709 mRNA downstream 162399 1337948 ~ 1344902 (-) True AMCG00000709
AMCG00000711 mRNA downstream 178484 1318048 ~ 1328817 (-) True AMCG00000711
AMCG00000721 mRNA upstream 265 1510456 ~ 1511147 (-) True AMCG00000721
AMCG00000728 mRNA upstream 68608 1578799 ~ 1589393 (-) True AMCG00000728
AMCG00000727 mRNA upstream 84626 1594817 ~ 1599675 (-) True AMCG00000727
AMCG00000726 mRNA upstream 98892 1609083 ~ 1611379 (-) True AMCG00000726
AMCG00000732 mRNA upstream 188022 1698213 ~ 1704869 (-) True AMCG00000732
TU157731 other downstream 6640 1493982 ~ 1500661 (-) False AMCG00000719
TU157704 other downstream 84891 1386843 ~ 1422410 (-) True G125814
TU157359 other downstream 1293689 194644 ~ 213612 (-) False AMCG00000687
TU157772 other upstream 252071 1762262 ~ 1767476 (-) False AMCG00000731
TU157782 other upstream 319356 1829547 ~ 1831310 (-) True AMCG00000741
TU157989 other upstream 941677 2451868 ~ 2457883 (-) False G126017
TU157991 other upstream 941677 2451868 ~ 2457883 (-) True G126017
TU157993 other upstream 941677 2451868 ~ 2457883 (-) False G126017

Expression Profile