RNA id: TU157655



Basic Information


Item Value
RNA id TU157655
length 455
RNA type TUCP
GC content 0.55
exon number 3
gene id AMCG00000723
representative False

Chromosome Information


Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 1599696 ~ 1606031 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GTCGACTGCTGCTGTCTGAGGGGAGAGTAATGGATCAAGCGAGCAATCGAACCACATGTTATCTTTGCTCAACGTGTGGGGCTCAGTGGCACATCCGAGAGGGGTGTACATCATGTGCAATTAAAATGGACTTGGCTTAGTGTTATGACACACAGTATTTGTATAGTAGCAGTATTAAACAGATGTGGTGCTGATGCCGAGCGGACGAGACCGGAGAAAGAAACGCGTCGGCAGGGACGTGGCGgTGCAGGGGACCAATGACAGCAGTGTGGTCAGTAAGGTCTCTGCAGCAGCGCTGGGATACTTCCTGGACCCCTTCCTGAAGAGCTTCGTGTGCAAGAGTGCCAGGAGAGCACCTCTCATCAACCGggggtACTATGTGCGCTGGCAGGCTGTTGATCACTGTGTGCGGGAGTTCCTGCGCCTCACAGCACACAGTGCCAGGAGACAGGTGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU157592 lncRNA upstream 172753 1426633 ~ 1426943 (+) True G125736
TU157567 lncRNA upstream 271057 1323503 ~ 1328639 (+) True G125713
TU157522 lncRNA upstream 292361 1304095 ~ 1307335 (+) True G125684
TU157523 lncRNA upstream 292361 1304095 ~ 1307335 (+) False G125684
TU157524 lncRNA upstream 292361 1304095 ~ 1307335 (+) False G125684
TU157621 lncRNA downstream 17169 1617808 ~ 1621888 (+) True G125756
TU157676 lncRNA downstream 211044 1811683 ~ 1814157 (+) True AMCG00000734
TU157877 lncRNA downstream 691196 2291835 ~ 2293872 (+) True G125955
TU157948 lncRNA downstream 827031 2427670 ~ 2520585 (+) True G125986
TU158014 lncRNA downstream 957353 2557992 ~ 2558257 (+) True G126036
AMCG00000722 mRNA upstream 5093 1590362 ~ 1594603 (+) True AMCG00000722
AMCG00000717 mRNA upstream 24257 1554678 ~ 1575439 (+) True AMCG00000717
AMCG00000714 mRNA upstream 136059 1452612 ~ 1463637 (+) True AMCG00000714
AMCG00000713 mRNA upstream 152288 1432992 ~ 1447408 (+) True AMCG00000713
AMCG00000712 mRNA upstream 177580 1413795 ~ 1422116 (+) True AMCG00000712
AMCG00000724 mRNA downstream 13198 1613837 ~ 1621391 (+) True AMCG00000724
AMCG00000725 mRNA downstream 37716 1638355 ~ 1644638 (+) True AMCG00000725
AMCG00000729 mRNA downstream 85341 1685980 ~ 1698573 (+) False AMCG00000729
AMCG00000730 mRNA downstream 104155 1704794 ~ 1710396 (+) True AMCG00000730
AMCG00000738 mRNA downstream 191769 1792408 ~ 1798431 (+) True AMCG00000738
TU157377 other upstream 1257925 339640 ~ 341771 (+) False G125561
TU157662 other downstream 68206 1668845 ~ 1696247 (+) True AMCG00000729
TU159397 other downstream 7016560 8617199 ~ 8620195 (+) True G127134
TU159756 other downstream 8547218 10147857 ~ 10154187 (+) False AMCG00000949
TU160309 other downstream 10399025 11999664 ~ 12011425 (+) True AMCG00001002
TU161370 other downstream 13569272 15169911 ~ 15174147 (+) True AMCG00001098

Expression Profile