RNA id: AMCG00000726


Basic Information

Item Value
RNA id AMCG00000726
length 1689
RNA type mRNA
GC content 0.70
exon number 6
gene id AMCG00000726
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 1609083 ~ 1611379 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGCGCTGCACCGTGAGCGTGTGGCCCCGCCTGGAGCCCTTCCTGCTGGGCGTGCTGCCGGCCGCCGCACCCCCCGCCAAGTTCAGCATGCACTACCTGCGCAAGATGGCGGCCTACGTGCGCTCCCGGGACGGCTGCTACCCCCGGCTGTGCTGGCCGCTGTGGCGCCACATCGCCTGCGGGAAGCTGCAGCTGCCCGGGGACACGGCCTGGCTGTACTTCGAGACCTTCGACTTGCTTGCCCCGCGGACCCCTGAGGAGCGGCTGGAGTGGGCGGAGGCGGCGTCGCAGTGCGAGACCCCCGAGGAGCTGGACACGCTGCGGCACAAGCTCTCTGTGGACACGCTGCAGTTCCTGCTCTTCCTGTACATGCAGCAGCTGAACCGTGTGTCTCTGCGCTCGTCTCTGATCGGGGAGGAGTGGCCCAGTCCGCGCTCCCGCTCCCCCTCCCCGCCCCCTGACCGTGACTCCAAGACCACCGCGCAGAACAAGaACTGGGACGATCAGGCCCACCTGGCGTTCGTGCAGGCCCACCTGTCGGAGCTGCTGGAGCTGGTGCTGGAGCCGGGGCAGGCGGGCCGGGGCTCGGGCCCGGGGGGAGCGCTGCGCGAGAGTCTGGTGTCGGCGGAGGCTCTGCGGGGCCTGAGCTTCGTGCTGGAAGGGTCCCTGAGCCGCGGCCGCGCCGTGCACCTGCTGCACGAGCTGCTGGGCTGGGGGCCGCTGCAGGGCCAGGCCGGTTACTCGGCGCTCACCCGCTGCTTCTCGCTGCCCCGGCTGCACGCCTGGCTGCGCGATGTCCTGGCGCCGAACCCTTTCGCCACCACCGCCTGCCTGCGCTCTGGGAGGAAGCTGGCCTGGGCCCAGCAAGTGGAGGGCTCTATGAAGCGGGCGAAGGTGGTACAGAACACGCACACGGCGCCGGAGGGCTCCAGGCTGGTACTGATGTCTCAGGTCTTCCGCCAGACGCTGGCCAAGAGCTCAGAGAAGCTGTCCGGGGCGCATGTCAAACTGCACCGCTGCTGCGAGGCCTTCATCTACCTGCTCGCCCCGCTCAGGTCGGTGAGTGTGGAGAAGTGTCGGCGCTGCACGCTGGTGCTGGGCCCGGTGCAGACGACGGTGCATGTGCAGGGCTGCGAGGACGTGCGTGTGGTGTGCGCGGCGGGCCGCCTGTCCGTGGCCGCCTCCTCCTACTGCACCTTCCACCCGCTGACCCCCCGCCGGCCCCTGCTGCTGCCCGGCAACGAGGCCCTGACGCTGGCGCCCTTCCACACGCACTACCCGGCGCTGGAGGACCACATGGCGCGTGCCGGGCTGGCCGTGGTGCCGAGTGCCTGGGACCGGCCCCTGCTGCTGGGCTCCGAGGGCCCGCCCGACAATCCCCCCTTCCGCCTGATGCCCCCCGGCGAGTTCTTTCGGCTGGTGGTGCCCTTCGAGATGGAGGGAGACACCAGCGAGGTGCCGGGCGGCCTGCCCCCTGCGTACCAGAGGGCTGTTGCGGCCCGGGAGCACCGTGTCCAGAGCTGGAGGAAGAGCATCACGGAGGCCAAGCTCAGCAAggACCAGCGGCGCCAGTTGGAGTCTCTGGTGGAGAAGAAGTTCCACGAGTGGCTGCTGGAGTCGGGACACAGGCAGCAGCTGGACAGCCtcatcccccccccacctgaGACCAAACAGGCGGCTGGCTAG

Function

GO: NA

KEGG:

id description
K16810 TBCCD1; TBCC domain-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157743 lncRNA downstream 31737 1575361 ~ 1577346 (-) True G125845
TU157574 lncRNA downstream 280435 1323503 ~ 1328648 (-) True G125719
TU157565 lncRNA downstream 289270 1319534 ~ 1319813 (-) True G125712
TU157564 lncRNA downstream 296829 1310839 ~ 1312254 (-) False AMCG00000710
TU157530 lncRNA downstream 301730 1304964 ~ 1307353 (-) False G125685
TU157778 lncRNA upstream 210873 1822252 ~ 1827742 (-) True G125875
TU157974 lncRNA upstream 816562 2427941 ~ 2520220 (-) True G126005
TU157998 lncRNA upstream 849336 2460715 ~ 2462488 (-) True G126020
TU158015 lncRNA upstream 946612 2557991 ~ 2558249 (-) True G126037
TU158101 lncRNA upstream 1522497 3133876 ~ 3135913 (-) False AMCG00000777
AMCG00000727 mRNA downstream 9408 1594817 ~ 1599675 (-) True AMCG00000727
AMCG00000728 mRNA downstream 19690 1578799 ~ 1589393 (-) True AMCG00000728
AMCG00000721 mRNA downstream 97936 1510456 ~ 1511147 (-) True AMCG00000721
AMCG00000720 mRNA downstream 98892 1507301 ~ 1510191 (-) True AMCG00000720
AMCG00000719 mRNA downstream 108427 1478740 ~ 1500656 (-) True AMCG00000719
AMCG00000732 mRNA upstream 86834 1698213 ~ 1704869 (-) True AMCG00000732
AMCG00000731 mRNA upstream 150650 1762029 ~ 1771025 (-) True AMCG00000731
AMCG00000742 mRNA upstream 206084 1817463 ~ 1822204 (-) True AMCG00000742
AMCG00000741 mRNA upstream 218165 1829544 ~ 1831200 (-) False AMCG00000741
AMCG00000744 mRNA upstream 230269 1841648 ~ 1843356 (-) True AMCG00000744
TU157731 other downstream 108422 1493982 ~ 1500661 (-) False AMCG00000719
TU157704 other downstream 186673 1386843 ~ 1422410 (-) True G125814
TU157359 other downstream 1395471 194644 ~ 213612 (-) False AMCG00000687
TU157772 other upstream 150883 1762262 ~ 1767476 (-) False AMCG00000731
TU157782 other upstream 218168 1829547 ~ 1831310 (-) True AMCG00000741
TU157989 other upstream 840489 2451868 ~ 2457883 (-) False G126017
TU157991 other upstream 840489 2451868 ~ 2457883 (-) True G126017
TU157993 other upstream 840489 2451868 ~ 2457883 (-) False G126017

Expression Profile