RNA id: AMCG00000733


Basic Information

Item Value
RNA id AMCG00000733
length 1614
RNA type mRNA
GC content 0.61
exon number 6
gene id AMCG00000733
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 1885580 ~ 1889165 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAATGCGGCTGTGTCCCCTAAACCAGGGCTGTCGGCGCCTGCGCACTGGATCTGAGGCCACCTACTCCAGACAGCCCGAGCACAGGCCGGAGCGCAGACAGAAGCCGCACAGAGCCGCAGCTGCCCAGCATGTCGTACACGGCGAAGATCGGCCCGTCCATCCTGAACAGCGACCTGGCCTGCCTGGGGGCCGAGTGCTCCCGCATGCTGGACTGCGGGGCGGATTACCTGCACCTGGACGTCATGGACGGCCATTTCGTCCCGAACATCACCTTCGGCCCCCCCGTGGTGGAGTGTCTGAGGACCCAGCTCGGCCCGCAGCCCTTTTTTGACATGCACATGATGGTGTCCCGGCCGGAGCAGTGGGTGCGGCCCATGGCGGCAGCGGGGGCCAGTCAGTACACCTTCCACCTGGAGGCCACCAGCAACCCTGGGCCCCTCATCAAGGACATCCGAGAGAGTGGCATGAAGGTGGGTCTGGGCATCAAGCCGGGCACCACGGTGGAGGAGCTGGCCCCCTGGGCGGCGCAGATCGACATGGCGCTGGTGATGACCGTGGAGCCTGGGTTCGGGGGGCAGAAGTTCATGGAGGACATGATGCCCAAGGTGAACTGGCTGCGAACTCAGTTCCCCTCTCTGGACATTGAGGTGGACGGTGGCGTGGGGCCGGACAGCATTCACAAGTGTGCGGAGgcCGGGGCGAACATGATCGTGTCGGGCAGCGCCATCATGAAGAGTGCCGACCCCCGCTCCGTCATCTCGCTGCTGCGCGCCGCCTGCGCCGAGGCCATCCAGAAGAGATCGCTGGACCGGTGAGGGCGGCCGCggccctcccccccccacccccgacaaATACACACACGTATGACAACCCTACCGAATCCAGCCCCGTCTAGAAATTGGCCCTCAACGTGGTGGGGGGGTCCTCAGTGCTGGAGTCTGAATACATGGGTACTCCATTCCACCCTCCACCCTCCACCCCCAGGATGTCACACTGGATAATTGTCACTGAGCTCTGCCTCAACCGGGACCCGGCACCGGCACCGACCCAGCCAGAAGAAGAACAACCCCGTTATTACTGCTGTCTCGGATTCAGCTGGgtgtctcctctccctctctctctctcgctctctctctcagcctgcACCAGCTGAAATCTGTCTTCAGCATTAAAAGGTGATTTAGTTTGTCGtcacaattgtattttattttccgaagcttgttttttgttcctgttgttgCTTGTGTGCGGTGCTGAGTGGACCGACCCGACGGCAGGGGATCCAGGTTGTCTCCTCTCGTCTGTTACACATGACAGAGCACACTGGAAGACATTCCTTtaggtttgtagtttgtgtAGTTTGCGCGCTCCTCCCGCCCGCTGCGCCGGGCCTTGGACTGTGCTGTGACGGTTGTGTTTCTTCACGTTTCTCTGTAAACGGGGATCAAGCAGACAGGCGCCTTGCCTGTCGCGGACAATAAAGCCGTGTGTTCGGGCCTCGCTGGTGTGTTGCGTCTGTTGCTCTTCACAGGGTCTACCCGAACACGTGGGCCGTGAGTAGTGTTTCCGGTCTGGTGAGATCTCAGCTGCCGGTCCTGCTGGGGGAAGACcat

Function

GO:

id name namespace
GO:0006098 pentose-phosphate shunt biological_process
GO:0004750 ribulose-phosphate 3-epimerase activity molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K01783 rpe, RPE; ribulose-phosphate 3-epimerase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157676 lncRNA upstream 71423 1811683 ~ 1814157 (+) True AMCG00000734
TU157621 lncRNA upstream 263692 1617808 ~ 1621888 (+) True G125756
TU157646 lncRNA upstream 276370 1594823 ~ 1609210 (+) True G125767
TU157592 lncRNA upstream 458637 1426633 ~ 1426943 (+) True G125736
TU157567 lncRNA upstream 556941 1323503 ~ 1328639 (+) True G125713
TU157877 lncRNA downstream 402670 2291835 ~ 2293872 (+) True G125955
TU157948 lncRNA downstream 538505 2427670 ~ 2520585 (+) True G125986
TU158014 lncRNA downstream 668827 2557992 ~ 2558257 (+) True G126036
TU158024 lncRNA downstream 877090 2766255 ~ 2766539 (+) True G126044
TU158031 lncRNA downstream 981751 2870916 ~ 2885184 (+) True G126050
AMCG00000735 mRNA upstream 495 1874998 ~ 1885085 (+) True AMCG00000735
AMCG00000736 mRNA upstream 11888 1869579 ~ 1873692 (+) True AMCG00000736
AMCG00000737 mRNA upstream 54830 1824869 ~ 1830750 (+) True AMCG00000737
AMCG00000734 mRNA upstream 73346 1805407 ~ 1812234 (+) False AMCG00000734
AMCG00000738 mRNA upstream 87149 1792408 ~ 1798431 (+) True AMCG00000738
AMCG00000745 mRNA downstream 54483 1943648 ~ 1945167 (+) True AMCG00000745
AMCG00000750 mRNA downstream 75866 1965031 ~ 1969537 (+) True AMCG00000750
AMCG00000748 mRNA downstream 86224 1975389 ~ 1978780 (+) True AMCG00000748
AMCG00000749 mRNA downstream 97923 1987088 ~ 1993395 (+) True AMCG00000749
AMCG00000747 mRNA downstream 119597 2008762 ~ 2024346 (+) True AMCG00000747
TU157662 other upstream 189333 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 284941 1599696 ~ 1600639 (+) False AMCG00000723
TU157377 other upstream 1543809 339640 ~ 341771 (+) False G125561
TU159397 other downstream 6728034 8617199 ~ 8620195 (+) True G127134
TU159756 other downstream 8258692 10147857 ~ 10154187 (+) False AMCG00000949
TU160309 other downstream 10110499 11999664 ~ 12011425 (+) True AMCG00001002
TU161370 other downstream 13280746 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 13519947 15409112 ~ 15420880 (+) False G128823

Expression Profile