RNA id: AMCG00000734


Basic Information

Item Value
RNA id AMCG00000734
length 1924
RNA type mRNA
GC content 0.66
exon number 10
gene id AMCG00000734
representative False

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 1805407 ~ 1814157 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGATGCGCCTGCCACCCACCACTGCTCAGACGCCGGGCTCTTGAGTGGCTGCTTTTCACAGGAACCCGGTCAGTGTGAAGGGGTCACGGGGTCACGGCAGTGGGGCGAAGAGGCCCGGGAGAAGCCGTGTCCGGCCCCGGCCCTCGCCCCACACGGGGGCCCCAGTCAGGGCAGGGCTGAGTGTGTCGTTGGCCAGGAGGAAGTGGAGGGAGGGGTATCTGAGgaGCGCAGACAGACTGGCATCTGACGGGCTGGTTCTGGAGGCGCCCGCTCTGATCAAAGTTTACTTTTGCGTATATTTGTAATAGCGTTACAATATTACTATAAATGCTTGTTATTATTAGACTATTTTAAAACGAAGAAAGCAGCGGACTGATTGATGGAGGATTAAAAACACTGGGAGACGCAGCAGCTTTTGCACTTCCCTTTTGTGGGCTATTTTAAGCGTCTTTCTCCCGGTCGGGGCGGACTGACGTGGCCGGGGCACCAGTACGTTTTCTGCCCAGTTGTGCTCAACCCACCCTGCGGCTCtacgcctctctctctccgggcCGTGTGTGAGCAATCTGCCGAGGCATCCGCGGATTACAGACCCGTTACTGTATCCCCTCCCGAGCCCGAGGGGGCACTCCGGCCCCGGGCGCGGGATGCTCAGGGCGCCGCGCTAGCCTCCGGGACGCACCCGTGTCCGGCCGGCCTGCGCTGCGATGGGCTGCGGGCTGAGGAAGCTGGAGGAGCCGGAGGACAGCAGCCCCGGCAAGATCTACTCCACCCTGAAGAGAGCGCAAGTGGAGACCCGCACCGACACGGCGTACGAGTATCTGCTGCTGGACTTCAGCCTGGAGGGCTGCAGTTGCccgtcagtgcagtgtgtgagctCCCTGACCGAGCTGCCCCAGGCCCTGCAGAGCCACTACAGGGAGGGCTTCCAGCTGGCCGCCCTGCACCCCGTCATCCTGTCCGTGGGCCGGTCCCGCCCGCTGCCCCTCAGCCTGCTGTACCGCGCGGTGCTGTCCCGGCCCCGGTACAGTAAGCAGGCTGCCCCAGTGGCTCAAAGCACGCCCCGGCTGTGGGTGGAGGAGTGGCCGCTGCCCGGAGACACCCTGACCAGTGACAGCGTGAGAGCTCTTATCGACAGGgtgAACGCCAATTCTCAGGGGGGGGTGCGGTTCGTGTGCTCAGTGCTGCAGCAGGGAGGCGGGGGGCCACGGAGCTGTAACGGGGGGCTGCCCAGCTCGCGGGGAGGTAGCAGCCGGAGCCCCCCAAGCAGCCGCGCAGGCGAAGGAGGGATGGAGGAGGACGGCACAGCGCGCAGTCAGgATCTGCGGCTCTTGGTGCTGTTCCACTCCTGGCCCCCCGGCTCCCCCGCCCCGGCGGCCCTGCCCTGCTCCTACCACCAGGGGGCTCTGTCCATGCGGGTGTCGCGCAAGGGCCAGGCGGTCTGCGCGCTGGAGGCCGATTGGCTGGAGCTGACGGCCGCCTACTACCGCAAGGGCTGGTCATTGGTCGACTCCTTCGTGTACTGGGACACGCCCAGAGGGGAGCCCGTGCCGCGCTCTCTGGAGGGGCTGTTTGTGTACGAGGAGCCCTGCCCCGGCCCCGGAGCCCCCCCGGCCAACGACACCATCGTGGTGGAGCAGTGGACGGTGATCGAGGGCTCGGAGGTGAAGGCGGACTACGGCCCCCTGGTCCACACGCTGGCGGAGTTCGGCTGGCTGCTCACCTGTGTGCTGCCCACGCCGATCATCAGACACGACAGtGAGGGCAATCTGGCCACCAAGCAAGTGGTGTTCCTCCAGAGGCCCGTCAGAACCCCCGAGCCGGCGCAGCGGCGAACAGAGGCTGGCTCTCAGTGCAGTGAGGTGTCAAAGCGCTCGGTGAGCAGGGGAGTGGGGGTGTCCCTGGCTGATGACCTGTCTCCc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157621 lncRNA upstream 183519 1617808 ~ 1621888 (+) True G125756
TU157646 lncRNA upstream 196197 1594823 ~ 1609210 (+) True G125767
TU157592 lncRNA upstream 378464 1426633 ~ 1426943 (+) True G125736
TU157567 lncRNA upstream 476768 1323503 ~ 1328639 (+) True G125713
TU157524 lncRNA upstream 498072 1304095 ~ 1307335 (+) False G125684
TU157877 lncRNA downstream 479601 2291835 ~ 2293872 (+) True G125955
TU157948 lncRNA downstream 615436 2427670 ~ 2520585 (+) True G125986
TU158014 lncRNA downstream 745758 2557992 ~ 2558257 (+) True G126036
TU158024 lncRNA downstream 954021 2766255 ~ 2766539 (+) True G126044
TU158031 lncRNA downstream 1058682 2870916 ~ 2885184 (+) True G126050
AMCG00000738 mRNA upstream 6976 1792408 ~ 1798431 (+) True AMCG00000738
AMCG00000730 mRNA upstream 95011 1704794 ~ 1710396 (+) True AMCG00000730
AMCG00000729 mRNA upstream 106834 1685980 ~ 1698573 (+) False AMCG00000729
AMCG00000725 mRNA upstream 160769 1638355 ~ 1644638 (+) True AMCG00000725
AMCG00000724 mRNA upstream 184016 1613837 ~ 1621391 (+) True AMCG00000724
AMCG00000737 mRNA downstream 12635 1824869 ~ 1830750 (+) True AMCG00000737
AMCG00000736 mRNA downstream 57345 1869579 ~ 1873692 (+) True AMCG00000736
AMCG00000735 mRNA downstream 62764 1874998 ~ 1885085 (+) True AMCG00000735
AMCG00000733 mRNA downstream 73346 1885580 ~ 1889165 (+) True AMCG00000733
AMCG00000745 mRNA downstream 131414 1943648 ~ 1945167 (+) True AMCG00000745
TU157662 other upstream 109160 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 204768 1599696 ~ 1600639 (+) False AMCG00000723
TU157377 other upstream 1463636 339640 ~ 341771 (+) False G125561
TU159397 other downstream 6804965 8617199 ~ 8620195 (+) True G127134
TU159756 other downstream 8335623 10147857 ~ 10154187 (+) False AMCG00000949
TU160309 other downstream 10187430 11999664 ~ 12011425 (+) True AMCG00001002
TU161370 other downstream 13357677 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 13596878 15409112 ~ 15420880 (+) False G128823

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000009_02001400_02018841.mRNA True 4172 mRNA 0.45 10 CI01000009 2000456 ~ 2020641 (-)