RNA id: TU157676


Basic Information

Item Value
RNA id TU157676
length 2089
lncRNA type sense_over
GC content 0.51
exon number 2
gene id AMCG00000734
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 1805407 ~ 1814157 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cagtGAGGGCAATCTGGCCACCAAGCAAGTGGTGTTCCTCCAGAGGCCCGTCAGAACCCCCGAGCCGGCGCAGCGGCGAACAGAGGCTGGCTCTCAGTGCAGTGAGGTGTCAAAGCGCTCGGTGAGCAGGGGAGTGGGGGTGTCCCTGGCTGATGACCTGTCTCCctgtggggggggtgtgggggcaTTCCCGGGGTTCGGAGGGGGATACCCCAGCGCCCTCACCGACCTGGAGGAGGGGGGCTTCGAGCAGGACGAGGGGGCTGCGCAGGTCACCTGTATGTGAGAGACGACcgactgacactgacacacactcacacactgactgactgactgactgacacacacaatgacagaaGCACCGCCCTGAACAGAGACCCTAACACCCCCTCCGCACTGGGACCCCTGCCTGTCCCGGCCCCCTCAGTGAGGCAGCGCAGACCCCCAGAgaccccctctctctgtggaCAGGAACCACCCTGACGCCCAGCGGCTCCCCACGGAGACAGTTCTTACGACTTAACTCATTCAATTCGCATCCTGGAatggagtggggtggggggggacagtATCATTAGAAACATCCCACCCCCCAACAGACTCAGCACTACGGGACCCCCAGAGGCACAGACTGGGAGACACGGACATTAAGCTCCCCCCCACACTGGCTCAGCCGCAGGCAGCGGGGCGGACAGGTGTAACCCGCCGGCCCGTCCACTCCAGGACCCCCAGGGCAACACGGGCGGCTCCTCGGGTTCCACTTCGAGGCTTCTGTCCCGCCCCCCAGACGGACTGTCTCGCTGGGCCCGGGTCTCCGAGCCTCTGGACCTCAAGGCAGAACCCAGCTTTTCCCAAACCGTCAGGGGGACTTCTTGtggtttgatttttcttcttgtatttTATCAGAATCCTggataattgtgttttttaaatctgtattttatttttaacagcacGGAGAcggagaaagcgagagagaggctCTGATGACCGGCCCTGCTGATGTCAGTGAGTGACAGCTCAGTGGCTGTGAGGGGCGgcacagttgttgttgttggtatttttgtatgttCCAGTATTGTCTGTTCATTTTTGCACATCATACGCAGAGCAGCGCTCACACACGcaccagcccccccacccccacccccacccccaccccaaaagCCTGTACCACGTCCCTCGAACCCACGGCTCAAACACCATTACACATCTGCATTTTGAATTGCGTCAGTTACCGTTTGAAATTTGGAATTGAAAAATGACTAACTGTGTCCTGTTTgatgatttgaaaatataaccTCATCTGTACATCACAACAACATAAACACAGTGTAAGATTAAAGGCACAACAATCCCAACCAGAAGAGTGGGAGACAAATATGCGGTTGAATAttgcaaatatgcaaatatccTGCATCTCAATGAGGGGAGGAGATGAGACCAAGAAAGATAGACGGGTTTGTTATTCAAAGTGGAGCTCCTGCGTGTCCTGCTAGAAACATAtctccctgacacacacacagtcagcgCTCGTTATAATACTGTGAACGGTTTAACTACACCAATGAGAAGGCAGACACTGCAAGGCAACACTTCAGTTCAGTTGTAGACCATCTTTGTTGTCGTGCCGAGTTTGTCGAGATATTCCAAtgagattgtattttcaaacacaaatcataaattgaaatacaaatgatgGAAAATACAGAACATCAAACACTTGTGAAAGTACATATTTGAGTAATAGTAACTGGTGATCGTGAAACAGGACGCAACTGTAGATTTGTAAGATAAGATTTTGGAAAAGTCACcagaaatacagacatttttctAAAATCGTGAGTTTCAAAGTGTCggatttaaattgcattagAAACAGAGCAGGAATCCCCgcgttttgtattttataaatactgTCATCTTAATttttgtatacacacacacacactacacagacCCGCTGAGTGACTCATACCTGAGCAGTATTGATCACAGCCGAGATGCAGGGACTGTTTCACACGGCTGGTTGGGGGTTTTTGtggttatttttaacttttttaaataaaagaaacctCTGTTGAATTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157621 lncRNA upstream 189795 1617808 ~ 1621888 (+) True G125756
TU157646 lncRNA upstream 202473 1594823 ~ 1609210 (+) True G125767
TU157592 lncRNA upstream 384740 1426633 ~ 1426943 (+) True G125736
TU157567 lncRNA upstream 483044 1323503 ~ 1328639 (+) True G125713
TU157523 lncRNA upstream 504348 1304095 ~ 1307335 (+) False G125684
TU157877 lncRNA downstream 477678 2291835 ~ 2293872 (+) True G125955
TU157948 lncRNA downstream 613513 2427670 ~ 2520585 (+) True G125986
TU158014 lncRNA downstream 743835 2557992 ~ 2558257 (+) True G126036
TU158024 lncRNA downstream 952098 2766255 ~ 2766539 (+) True G126044
TU158031 lncRNA downstream 1056759 2870916 ~ 2885184 (+) True G126050
AMCG00000738 mRNA upstream 13252 1792408 ~ 1798431 (+) True AMCG00000738
AMCG00000730 mRNA upstream 101287 1704794 ~ 1710396 (+) True AMCG00000730
AMCG00000729 mRNA upstream 113110 1685980 ~ 1698573 (+) False AMCG00000729
AMCG00000725 mRNA upstream 167045 1638355 ~ 1644638 (+) True AMCG00000725
AMCG00000724 mRNA upstream 190292 1613837 ~ 1621391 (+) True AMCG00000724
AMCG00000737 mRNA downstream 10712 1824869 ~ 1830750 (+) True AMCG00000737
AMCG00000736 mRNA downstream 55422 1869579 ~ 1873692 (+) True AMCG00000736
AMCG00000735 mRNA downstream 60841 1874998 ~ 1885085 (+) True AMCG00000735
AMCG00000733 mRNA downstream 71423 1885580 ~ 1889165 (+) True AMCG00000733
AMCG00000745 mRNA downstream 129491 1943648 ~ 1945167 (+) True AMCG00000745
TU157662 other upstream 115436 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 211044 1599696 ~ 1600639 (+) False AMCG00000723
TU157377 other upstream 1469912 339640 ~ 341771 (+) False G125561
TU159397 other downstream 6803042 8617199 ~ 8620195 (+) True G127134
TU159756 other downstream 8333700 10147857 ~ 10154187 (+) False AMCG00000949
TU160309 other downstream 10185507 11999664 ~ 12011425 (+) True AMCG00001002
TU161370 other downstream 13355754 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 13594955 15409112 ~ 15420880 (+) False G128823

Expression Profile