RNA id: TU157782


Basic Information

Item Value
RNA id TU157782
length 877
RNA type TUCP
GC content 0.62
exon number 5
gene id AMCG00000741
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 1829544 ~ 1831310 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtttaaactgACTGTCCCCTAGATGCCCCCTGCAGTACTAACactcgtctgtctgtctgtctaggaggaggaggaggaggaggaggagggtggagCCACAGGGGACGAGGATGCTGGCCCCCCAGACGAGTGTTCGCCCGGCTCATCTCGAGTCCCCCATAGAGCCAACGCTCAGCCAACAGGCTCAGAGGAGGGGGTGAGCCCCTCGGTGCAGCGTGCCTTTGCCTCCatgctgggggagggggagcagcaagaggaggaggaggaggaggatgaagagaTGGAtggggaggaagagggggatgATGAGGGAGAGCAGGTGGGAGCTCCCTCCGCGGGGGACGTGTTTGCCCTGGAGATGGAGCTGAACCGAGAGAACAAAAAGATGATGAGGGAGCGGAGGCACCGCAGTAAGCTGCCCCGGGCGCTGCGGGGGCTGATGGGAGAGGCCAATATCCGGTACGCCCGGGGGGAGAAGGAGGATGCCATCACCATGTGCATGGAAATCATCAGACAAGCCCCGCTGGCGTTTGAGCCTTTCTCCACGTTGGCGATGATCTATGAGGACCAGGGCGACCTGGAGAAGGCCCTGCAGTTTGGGCTGATTGCTGCCCACCTCAACCCCAGTAACCGTGATGACTGGGTCAAGCTGGCAGACATGTCCCTGGAGCAGGACAACATCCGGCAGGCCATCTTCTGCTACTCCAAGGCCATTAAGTACGACACCAGCAACGTGCGCTTCCTGTGGGAGCGCTCCAGCCTGTACGAGCAGGTGGGGGAGCACAAGCTGGCCATGGACGGATACCGGCGCATCCTCAGCCTGCTGCCCCCTACTGACGGGGAGCACTTCATGCAGCTGGCCCGAGACATGGCCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157778 lncRNA downstream 1805 1822252 ~ 1827742 (-) True G125875
TU157743 lncRNA downstream 252201 1575361 ~ 1577346 (-) True G125845
TU157574 lncRNA downstream 500899 1323503 ~ 1328648 (-) True G125719
TU157565 lncRNA downstream 509734 1319534 ~ 1319813 (-) True G125712
TU157564 lncRNA downstream 517293 1310839 ~ 1312254 (-) False AMCG00000710
TU157974 lncRNA upstream 596631 2427941 ~ 2520220 (-) True G126005
TU157998 lncRNA upstream 629405 2460715 ~ 2462488 (-) True G126020
TU158015 lncRNA upstream 726681 2557991 ~ 2558249 (-) True G126037
TU158101 lncRNA upstream 1302566 3133876 ~ 3135913 (-) False AMCG00000777
TU158325 lncRNA upstream 1719530 3550840 ~ 3552977 (-) True G126275
AMCG00000742 mRNA downstream 7343 1817463 ~ 1822204 (-) True AMCG00000742
AMCG00000731 mRNA downstream 58522 1762029 ~ 1771025 (-) True AMCG00000731
AMCG00000732 mRNA downstream 124678 1698213 ~ 1704869 (-) True AMCG00000732
AMCG00000726 mRNA downstream 218168 1609083 ~ 1611379 (-) True AMCG00000726
AMCG00000727 mRNA downstream 229872 1594817 ~ 1599675 (-) True AMCG00000727
AMCG00000744 mRNA upstream 10338 1841648 ~ 1843356 (-) True AMCG00000744
AMCG00000743 mRNA upstream 12337 1843647 ~ 1843889 (-) True AMCG00000743
AMCG00000740 mRNA upstream 14999 1846309 ~ 1863624 (-) True AMCG00000740
AMCG00000739 mRNA upstream 35112 1866422 ~ 1869208 (-) True AMCG00000739
AMCG00000751 mRNA upstream 237865 2069175 ~ 2072395 (-) True AMCG00000751
TU157772 other downstream 62071 1762262 ~ 1767476 (-) False AMCG00000731
TU157731 other downstream 328886 1493982 ~ 1500661 (-) False AMCG00000719
TU157704 other downstream 407137 1386843 ~ 1422410 (-) True G125814
TU157359 other downstream 1615935 194644 ~ 213612 (-) False AMCG00000687
TU157989 other upstream 620558 2451868 ~ 2457883 (-) False G126017
TU157991 other upstream 620558 2451868 ~ 2457883 (-) True G126017
TU157993 other upstream 620558 2451868 ~ 2457883 (-) False G126017
TU157994 other upstream 620558 2451868 ~ 2457883 (-) False G126017
TU158078 other upstream 1205621 3036931 ~ 3041964 (-) True G126089

Expression Profile