RNA id: AMCG00000747


Basic Information

Item Value
RNA id AMCG00000747
length 861
RNA type mRNA
GC content 0.62
exon number 5
gene id AMCG00000747
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 2008762 ~ 2024346 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAGGAATATGTCGTGGTGCTGTGGGGGGCGGGGGTCTGTGGTTTCTCGAGATTGGGATCTGTTGCTCCAGGTCCAGGCGATCACTGTGGCTTTGATGCGGCCCTGTTGTCTGGTCGGGAGATCACAATGGCTCGACACCCCCAGGGGTCAGGTGCTGCAGGGgggATGCTCCTGAAGAGAAGCGGCAAGTCCCTGAACAAGGAGTGGAAGAAGAAGTACGTCACCCTGTGTGACAACGGGCTGCTCACCTACCACCCCAGCCTCCACGACTACATGCAGAACGTCCACGGCAAGGAGATCGACCTGCTGAGGACCACGGTGAAGGTGCCGGGCAAGAGGCCCCCCCGTGCCATCTCCACCTGCGCCCCCGTCTCCAGCCCCAAGACCAACGGCCTGGCCAAGGATATGAGCAGCCTGCAGCTGGCACAGAGCGCTGGCACGGTGACCGGCAGCTCCTCCGCCTCTCAGATGGCCAGCGGCATCAGCCTGGTCTCCTTCAACAGCCGGCCGGACGGCATGCACCAGCGCTCGTACTCGGTGTCCAGCGCCGACCAGTGGAGCGAGGCAACCGTCATCGCCAACTCGGGCATCAGCACAGACACAGGCCTGGGGGACTCGGTGTGCTCCAGTCCCAGCATCTCCAGCACCACCAGTCCCAAACTGGACCCCCCGCCCTCCCCCCACGCCAACCGCAAGAAGCACCGCCGGAAGAAGAGCACCAGCAACTTCAAAGCAGATGGCATCTCCGGCACTGCCGAAGGTAACCGCCGCGCCACCGCGCCAGTCACACACGTGTCTACCAGGAACATCCTTACGGAGGAGTTGAGTTGTAGTGGAATTATTAAAAAACCCGAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157676 lncRNA upstream 194605 1811683 ~ 1814157 (+) True AMCG00000734
TU157621 lncRNA upstream 386874 1617808 ~ 1621888 (+) True G125756
TU157646 lncRNA upstream 399552 1594823 ~ 1609210 (+) True G125767
TU157592 lncRNA upstream 581819 1426633 ~ 1426943 (+) True G125736
TU157567 lncRNA upstream 680123 1323503 ~ 1328639 (+) True G125713
TU157877 lncRNA downstream 267489 2291835 ~ 2293872 (+) True G125955
TU157948 lncRNA downstream 403324 2427670 ~ 2520585 (+) True G125986
TU158014 lncRNA downstream 533646 2557992 ~ 2558257 (+) True G126036
TU158024 lncRNA downstream 741909 2766255 ~ 2766539 (+) True G126044
TU158031 lncRNA downstream 846570 2870916 ~ 2885184 (+) True G126050
AMCG00000749 mRNA upstream 15367 1987088 ~ 1993395 (+) True AMCG00000749
AMCG00000748 mRNA upstream 29982 1975389 ~ 1978780 (+) True AMCG00000748
AMCG00000750 mRNA upstream 39225 1965031 ~ 1969537 (+) True AMCG00000750
AMCG00000745 mRNA upstream 63595 1943648 ~ 1945167 (+) True AMCG00000745
AMCG00000733 mRNA upstream 119597 1885580 ~ 1889165 (+) True AMCG00000733
AMCG00000746 mRNA downstream 10496 2034842 ~ 2037990 (+) True AMCG00000746
AMCG00000752 mRNA downstream 28841 2053187 ~ 2054534 (+) True AMCG00000752
AMCG00000753 mRNA downstream 133295 2157641 ~ 2158726 (+) True AMCG00000753
AMCG00000758 mRNA downstream 189303 2213649 ~ 2226361 (+) True AMCG00000758
AMCG00000762 mRNA downstream 320975 2345321 ~ 2382010 (+) True AMCG00000762
TU157662 other upstream 312515 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 408123 1599696 ~ 1600639 (+) False AMCG00000723
TU157377 other upstream 1666991 339640 ~ 341771 (+) False G125561
TU159397 other downstream 6592853 8617199 ~ 8620195 (+) True G127134
TU159756 other downstream 8123511 10147857 ~ 10154187 (+) False AMCG00000949
TU160309 other downstream 9975318 11999664 ~ 12011425 (+) True AMCG00001002
TU161370 other downstream 13145565 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 13384766 15409112 ~ 15420880 (+) False G128823

Expression Profile