RNA id: AMCG00000749



Basic Information


Item Value
RNA id AMCG00000749
length 870
RNA type mRNA
GC content 0.64
exon number 7
gene id AMCG00000749
representative True

Chromosome Information


Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 1987088 ~ 1993395 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGACACCGTGCTTGCAGTGTTTAGCCGCTCCGCAGTGACAATTCGAGGGCAGCAGCTTGAGAGCAACTACCATGATTTACCCCACTGTTCACCCCCCTGGCTGGCTGGGCAGTGCCGCTCTGGGCTCGGAGAGGGGGATGCATTTCCACTCCAGATGTTCAGGGACGGACGCAGCAGGCCGGGCTCGGGCAGCCATGCAAGTTCGGCCCTGGGGGAGAAGACGCACAAAAACGCAACTTGTGTGCGAGTTTTACGGTCCCGCGCGGCCTGTGGGACTTTGGAGACGCATGCCCTTGGACTCCCGCTCTCACCTGAAGCCGCACCGCAGAGCTGTCCCAGGCGTCCCGGAGACGAGACGGACGAGGAAATTAACACGTCGATACCATCCCCCTGCGTCAGCACTCCTGCAGGGGCCGTGGGCCGGTCAGGCCTGGCGTTTCACCGGCCCCCTCACCCCTCCGTCAGCGCCTCGAAAACCCCGAGCCCCCTGGAACTCTTTGCCCAGAAGATCGTGGCCACCAGGAAGAAGCAGCAGCTGTCCATCGGGCCCTGCAAATCGCTGCCCAACTCGCCCAGCCACTCGTCTGTCTGCTCTGCGCCCGTCTCCGCCGTGCACATCAGCCAGACGAGCAACGGGGGCGGCAGTCTGAGCGATTACTCCTCCTCTGTGCCCTCCACGCCGAGCACCAGCCAGAAGGAGCTGCGCATCGACGTCCCTCAGACGGCCAACACGCCCACCCCCTCTCGCAAAGGCAATGAGCCCGACAAGGAGAAGAAAGGCGTGGAGGGCCGCGCGGACAGCATTGGAAGCGGCCGCGCTATCCCAATTAAGCAGGTACGCTCCCGGGCGCCGTCTGTGCCGCCGTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU157676 lncRNA upstream 172931 1811683 ~ 1814157 (+) True AMCG00000734
TU157621 lncRNA upstream 365200 1617808 ~ 1621888 (+) True G125756
TU157646 lncRNA upstream 377878 1594823 ~ 1609210 (+) True G125767
TU157592 lncRNA upstream 560145 1426633 ~ 1426943 (+) True G125736
TU157567 lncRNA upstream 658449 1323503 ~ 1328639 (+) True G125713
TU157877 lncRNA downstream 298440 2291835 ~ 2293872 (+) True G125955
TU157948 lncRNA downstream 434275 2427670 ~ 2520585 (+) True G125986
TU158014 lncRNA downstream 564597 2557992 ~ 2558257 (+) True G126036
TU158024 lncRNA downstream 772860 2766255 ~ 2766539 (+) True G126044
TU158031 lncRNA downstream 877521 2870916 ~ 2885184 (+) True G126050
AMCG00000748 mRNA upstream 8308 1975389 ~ 1978780 (+) True AMCG00000748
AMCG00000750 mRNA upstream 17551 1965031 ~ 1969537 (+) True AMCG00000750
AMCG00000745 mRNA upstream 41921 1943648 ~ 1945167 (+) True AMCG00000745
AMCG00000733 mRNA upstream 97923 1885580 ~ 1889165 (+) True AMCG00000733
AMCG00000735 mRNA upstream 102003 1874998 ~ 1885085 (+) True AMCG00000735
AMCG00000747 mRNA downstream 15367 2008762 ~ 2024346 (+) True AMCG00000747
AMCG00000746 mRNA downstream 41447 2034842 ~ 2037990 (+) True AMCG00000746
AMCG00000752 mRNA downstream 59792 2053187 ~ 2054534 (+) True AMCG00000752
AMCG00000753 mRNA downstream 164246 2157641 ~ 2158726 (+) True AMCG00000753
AMCG00000758 mRNA downstream 220254 2213649 ~ 2226361 (+) True AMCG00000758
TU157662 other upstream 290841 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 386449 1599696 ~ 1600639 (+) False AMCG00000723
TU157377 other upstream 1645317 339640 ~ 341771 (+) False G125561
TU159397 other downstream 6623804 8617199 ~ 8620195 (+) True G127134
TU159756 other downstream 8154462 10147857 ~ 10154187 (+) False AMCG00000949
TU160309 other downstream 10006269 11999664 ~ 12011425 (+) True AMCG00001002
TU161370 other downstream 13176516 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 13415717 15409112 ~ 15420880 (+) False G128823

Expression Profile