RNA id: AMCG00000760


Basic Information

Item Value
RNA id AMCG00000760
length 6904
RNA type mRNA
GC content 0.50
exon number 23
gene id AMCG00000760
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 2423045 ~ 2462484 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGAAACGACTGCTTCCGCGCGGAGGGGGACTGTGATTCGGCAGAGCTGAGTAACCCCTGGGAACGAGATGCTCAGTTCTGCAGCAGGTCCAGTCTGCCGCAAGGCGTGGCCCCGGCAGTTAAACGAACTGTTACCTACAAGCGGTGCCTGCCCAGGAGCGGAATCAAGATTAGGACGATCTTCATTTCTCTGCATgCAGAGGCGAGGCTGGCAGCGAAGAGGGCAGCCAGAGCCGAAGCACGGGAGATCAGGATGAAGGAGCTGGAGAGGCAGCAGAAAGAGAAATACTACGGGCTGGACAACAAATGGGGTGATATCGAGCAGTGGATGATCTCAGACGATGATGAACGGATGTCCGTGGGCAGCCGCGGCAGCCTGAGGGGGAATTACTGCTCCTCTGACCtgttcagcagcagcagcctgtcCTCCTCCAAGCTGCAGTCCTCCGCGCAGAACGGCACTCGGCCCTCAGAGTACAGCGGCTTTCTGGGGTCCAACTCCCGTGCCTCCTCCCGGGCCAGTTCTGCCCGCGCCAGCCCCGTGTGTGCGAATGACGGCGGCTCGGTGGCCGGGTTTCTGCGCAGCGCGGCGAGCAGCAGCGTCCTGGGCGACCTGGACGACGTCACCATCCCCGACCTGCCAGACGTGGAGGAGAGATCAGACAAGGACTTTTTGGAAAAGGGGACTCGAACTGCCTCCACCCTGTCAGCTGCTACCCTCGCCTCCCTGGGCGGGATATCCTCTCGGAGAGGGAGTGGGGACACCTCAGTTTCTGCCGATACGGAAGCATCCATTCGAGAGATTAAGGACATTAATGAGCTGAAGGATCAGATTCAAGATGTGGAAAGCAAATATATGCAGGGTCTCAAAGAAGTCAAGGACTCTCTGGCTGAGGTGGAGGAGAAATACAGGAAGGCGATGGTTTCCAACGCCCAGCTGGACAACGAGAAGTCTAACCTGATGTACCAGGTGGACACGCTGAAGGACTCGCTGATGGAACTGGAGGAACAGCTGTCCGAGTCTCGGCGAGAGTACGAGGAGAAGGCCAAGGAttatgaaagagagagacacgcCCACAGTGTGCTCCAGTTCCAGTTTAATGAGATGAAAGAGACCCTTCGACAAAGTGAAGAATTGTTAACTGAGATCCGCCAGCTGCATCTGAAGCAGGATGGCTATGTTAGGGAGATCTCTGATCTGCAGGAAACCCTGGAGTGGAAGGATAAAAAGATAGGGGCCTTAGAAAGGCAGAAGGAGTATTCCGACGCCATCCGTAATGAGCGTGATGAACTCCGTGATGAGGTGGTCGTGCTGAAGGACGTACTGAAGAAACACGGCATAGTCCTGGGCCCGGACCTGCCTGCTAACGGGGACGTGGGCGATGGTGTGAACGACGCAGACTCCTCCACGCGCTCGGCTCAGGACTCGATTCGCACGTCACACTCGACCGGGGACGGGCTGCTGGGCAGAGTCAAGGAGGtgcagaaggaaaataaacatgtgGAGGATGTTGGAAATAAAGAGATCTTGGAGAAGGCTGAGAACAATACTGAGGGGCAGCAGGAGGAGGCAGAATCAGAGGAGGGGAGTGGTGGCGAAAAGATGCAAGGGATCCAGGGTGCGGACAAACTGTCATCGCCAGCTCCCTGTGGCGACCTTCTTAATAACCTAGAAGAACAGAGCCACACTGCCAGTATACCCACCCCAGAGAACGCAGAGAAAACACAGTCTCACTTGCCCTTGGGCAGTGATGAAGACACCCGGGACTCGGTAACAGATCAACATGACACAGACAATGACATTACCAAGGTCATGCCAGAGCCACTAGGGGTTAGCTTAGTCTGTGACAGTACAGGGGACGCTAACTTAGTAGCGGAGAGAGAGGGTAAGAGAGACGCTGTTACTGAAATGGGTAATGCAGAGGTGCAGGTGACAATAACAGCGCCTGAAGAAGAGGGAACTGGAGAGCAGAGGTCCTCCAGTGAGGGCGATGAAAGCTCAGAAGAGCGGGTGGTCAGCAGTGAGACCGGTGGTCAGACTGGAGACAGCGTAGATGCAAAAGGGGAGGAAAGTAAAGCTCTAAGCTTAGATTCAGGCGGTGACGGGTCTAGTTCAGCAGAAGCAGATGAGACAAGCACAGGCACTGAGGAAAAGGCAGAGGGCAAAAGGGCTGCAGACATTGAAACCAAGATACAAGCTCCAAGTGAGATTGTAGGGGAGAGCCCAGAGTTGAGCTTTGGAGAGAATTGCACGGAGAATGAAACACAGGATCTAGAAAATGAAGGTTTGGTTTCTGGGGTGGAAAGTGTCGAGAGCAAAGACTCAACAGGTGACGGTTCAGGTCAGGTAGAAGAAACAGTCAGTGTCAGCGAGAGTGCAAAACTAATTATCGATGCTGTAAAAGAGGACGGCCAGGAAAGTGATTCTGAGGGCGAGGAGGAAACTGATAGCCAGGATACAGATTCCATGAAATCAGTGGAGGAAAACGTCGAACCAGTCAGAGACAGCACCGTGCTGTCTGCCAGGAGAGAAGGTAGCGAACAAGAGTCTCAGGACCTCGCAGTGGGCCAACCAGAGGATGGTTGTTGTGATCGTGAAGCCAGTGGCAGTGAGGAGAAGGTAGCTGAGGTTTTAAGTGATCAGGAAGGGAGGGTTCAAGAACCCAAGCTTGTTTCCACGGAGGCAGAGGTAGAAGGAGAAAGTGCTCTGTCGGTCGTTATAGTGACCCCAGCTCTGTTGCTCATTCAGAATGACCCCGAGAGCAGAGATGAAAGTGAAGATGTCTCATCAGAGAGGCCTCATGGGTCATCAGAGGCTCAGTGCCCTGATGATCCAGGCAGGGAGACTGTAGAGAGAACAGCCAAGGTGAGTGAAGGTGAGAGTGAGGTGAAGGCAAAGGAGGGAGACCAGGATCTTGAGGCTGAAACTGAAGGGAAACCAGAGGAAGCTAAAAGCAATGAGGAGGACAACATCATCCAGGAGGCAGATGCAGAGGAAATGGAAGAAGACAAGAAGGTTGACGGTTCCTTAACGGCCGTGGGagtggagaaggagaagatACCTGACACAGTGCACAAACATGAAGAAGAACATGAAGGCCAATCAGAGACTGAGTGTGAGGTAAAGGAGCCCAGAGATCAGCAGGAGGATGAGAAAGCCCAGATGTCCACAGCTGTACCTGAAGAGGAAAATCCTACAGGTGACCAGAGGGAGAAAAAGGAACCTGTTGAAAGGAGTGAGTTAAAAACAGATGAGAGGGACATCTTTGAAGACTGCCTTCAATCCATAGTAATTAAGGCTGTGCTCAAAGGTGAAGATGAAAAGAATGCATCAGACACCAGCCCACAGGAAGAGACCCAGGTGTGTGAAGATGCTTCAGAGCCTCAATTGGAAAATGCTGTGTTAAAAAATGAACCTGAACTTGACCCCCAGGATAATccagatacaaacacacaccccgACAAATTAGACACAGCTCCAGAAGAAGGAGCATATACCAGTGATGTCCCAGAAGAGGTCCTCATGGAAACAGGTGTTACAAAAAGTAGTGTTGAGGCAGAGAAGGAAGAAAGTGACCAGAAACCTTTGGGTGTTCCAGAACACGCATCGAAAGGAATGCCTGAGGAGACTTCTGAAAACGCTGACATGCAACTTGCAGAAAGAACAGAGGTGGAAGAAAGTGAAGTTGGGGCAAAGACTGAAGCACAAGTCGAAGGTGATGGATTAGCAGCTGATGAATCAGTAATCACCATGGAAGAGCAGTGGCCAGCTGAGGAAACAGAGGAGCATCAGAGGGACACCGGGGAAAAAACTGAGGCACTGATTAAAGAACAGTTAGAGGACATGCCAAAAGAGGATGTCAAAGATGGTAAATCATCGTTCGAGGAGAAAGAGGTGCAGATCAGTGAGGTTTCAGAAGAAATTATGTTGTCAGAAGTAGCTGGTGTTCAGCAAATGGTTAGCGATGGCTCCCAGGATGTCCCCTCAGATGGAACAAGTGACCAAGAACCTGTCACAGTCTTGGATGAACCTGCTGCACCAGATTCAAACAAAGATAAAGGGAATTCAAACAATGATAAAGGGAGTGAAGGCCAGAGTCCCGAACACCAAGCCCAGACAGAAGTCCAGGAAGGAACTGTCACAGTCAAGAGTCAAGAGAAGGATAAAGCAGGAGACTCCACTGAAATGCAGGTTGCCGCACAGACTGATGTCAAGACAGTGGATGATGCGTCTGAAAAAGAGCAAGAACATTCCAGAGAAGAGAAGGATGAACCTCCGATTCAGCccaagaatgaaaaagaaacagcagacaaagaggaggaggatgaagaagaagaggaggatggagaCTCGTTTGAGTTTGACGATGAATCAGGGCAGGATTTTGAGGCGTCAATGGAAGTCCTTCCAGAAAATCAGACCAAGGAAGGACAAACAGCTGCCACAGCCACCACAGCTGAGCAGAGTGTGAAAGAGGGGGAAGCAAATCTGGAGGCCAACAGCGTTAGTCAAGATAAAACATCAGAACATGCAGAGTCTAACACAACAGATGCCCAAGAACCATCAGAAACTCAAAAACAAGAACCTGAGCAGAAAAATGGGGAGGAGGAGAGTTCTCCTGTGGAACAAGCAGAACATGTGAAAGGCTTAGAGGGGAGTGAGCAGGAACAGAGCGAGTCTAACCAGGGGGACAGCCGAGTTGAGGAAGGAAAAGAGGCAAGCAGAGAGGTGGAGGAATCAGAGAGTCAGGGTGAAGGCAGTGAGAGCCCAGGGGTTAGAGAAGAGAGCAAGGAAAGCACACCTGAGGGCAGTGAAGACCTTGGCAAGGCAGACTCAGAGATTCGACTGAGGAAGCTGgtggatgagagagagagtctggtAGAACAGGTCAAGAAGCTGAAGGCACAGATCGAGGACAAGCCGAAGACCAGGACAGGGGACAGCGACGGCACCCCGGAGCCAGTCCTGCAGAACGGCACAGACCTGCACGTCCTGGACTTACAGAGTAAGATTCCCTCAGTCCCTGACGATACTTTCCCAGGAGATGCCAACAGACAAATCAGTGACCTTAAGTTTAAACTGGTCAAATCGGAACAGGAAGTAACGGCTTTGGAGCAAAACgtAACGAGATTGGAAGGCCAAGTTTTGCGCTACAAGTCTGCTTCTGAGAATGCCGAAAAAGTAGAGGATGATCTTAAAGCGGAGAAACGCAAGCTGCAGAGAGAGctcCGTTCTGCACTGGATAAAATCGACGAGTTGGAAGTCAGCAACAGCCACCTGGTGAAGCGTCTGGACAAGATGAAAGCCAACCGCAGCGCGCTGCTGTCCCAGCAATAAGGACCACCCTGTCCGAGCCCTACGGACGCCTGAACATCCGAAATGACATTCGCGTTCGCAGCTCAGTGTGTAACGatcaccataaaaaaaaatagactaaatgaaacaaaaaaacacacaaagatatGAAAACCTAGAGAAACTCTAAGATTAACtatacaaatgcacacatgcacTACGTGCCACTTCATACCATGGTATTTAggtcaataaatacatacattaataaataccaAGTAGCAACCCCAGCAGTATATGAAGATACTCTGGGTGGCAGGTTATCTTTGTGCCTCGCTTCTTTTTCTACATCGCATTCAGGTCAGGTCAGGATTGTGGACGGATGTCACTGGGGTAGGGAAACCCCAAGACTGGCGCTCAGGGGTGCCGGTGGCTGGCAGCTCCTGGGGGCCTCAGTTCTGTGCTTCGCTAGAAGGACAGGAGGATTCGCTAGCGGAGCAGTGTGTGGGGATGTGTTCGCTTGAAATGAACAGTCTACATATCATCCTTTAGCTCTCTACTGCCCCTTCAGAACTGCTCCAGGTGTTGGCAGTGTGCCTTCCTGAGCCGGACGCCCTTCCCTCTGCCCTGCCGATGGCCCCGTCTCACCCACTGCACAGTTATTAACATGTCTTTTCTGGGTGACGTTCGGTGCTGTAGATGCAGGAAGCCTCTGCGCTGTGGGCATGTAGGTCGCTCTGTCCCCTACAGCCATGCGGTGTCCGTGAAGGACAGAGAAAGATGGGGAAACCATGACTGGATCTAGTGGAGATTATTTTGGTctgtgtcccccccccccccaaggatggcattttcttcttttgaatgTTTGTCATGAGAGCAAACGACGAACTCCGCACCTCTCTTTTCAGTCCGCCAAACTGTGtgatctttattattttgttttgttttgtgttgtgatgttgttttgttacattcaTCTGATAAAAAGGTCACAGCCTGTGTAGTCAATGGATGGACGGatgaatggatgaatggatggatagatgtAGGTGAACAATGGCAGGTTCTGGGCCTTCCACTGACCACCAGCTATTTTCCAGATCTTTATTTTTGACACAGACATTATATCACAGCCATCACCATGGAAGATATATCCGCACTCGCGATTTCACCAGCTTTTAATGTCAGAAGATTGTGTCTTTACCAAAAGAAAACACGTTACTCTTGTCCTGCTATTTTGTAAGAAGATATCTGAGATAAACTGCAATAATACTGACTTCTAGCAGAAGGTATTGGTTCTTGCAAAAACACTACGCTGAATTCGACAGCCTGATGCAGATCTGGAGGCGCATTGGACGCATTCCCTCTCCCGGCGCAAAGTAGTTCGCATTATTGTAGCCCTCGaagaaagacacaaagacaaGATGGTAAGACAGACGGGTCGGTGCTGTGAGTGCGGGGAGTCCACCTTACCTCCTCAGCCTGGATCCCTGCAATCTCCAGCTCTAGAGAGGCACTGAACAGGGGTGTTtacaaagctttaaaatgtaatctttgtGCAATATTGAAAAATGTCGATTAAAgcttgaaaaaacatttaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157877 lncRNA upstream 129173 2291835 ~ 2293872 (+) True G125955
TU157676 lncRNA upstream 608888 1811683 ~ 1814157 (+) True AMCG00000734
TU157621 lncRNA upstream 801157 1617808 ~ 1621888 (+) True G125756
TU157646 lncRNA upstream 813835 1594823 ~ 1609210 (+) True G125767
TU157592 lncRNA upstream 996102 1426633 ~ 1426943 (+) True G125736
TU158014 lncRNA downstream 95508 2557992 ~ 2558257 (+) True G126036
TU158024 lncRNA downstream 303771 2766255 ~ 2766539 (+) True G126044
TU158031 lncRNA downstream 408432 2870916 ~ 2885184 (+) True G126050
TU158038 lncRNA downstream 547759 3010243 ~ 3068463 (+) True G126054
TU158053 lncRNA downstream 619262 3081746 ~ 3083587 (+) True G126068
AMCG00000761 mRNA upstream 32582 2389675 ~ 2390463 (+) True AMCG00000761
AMCG00000762 mRNA upstream 41035 2345321 ~ 2382010 (+) True AMCG00000762
AMCG00000758 mRNA upstream 196684 2213649 ~ 2226361 (+) True AMCG00000758
AMCG00000753 mRNA upstream 264319 2157641 ~ 2158726 (+) True AMCG00000753
AMCG00000752 mRNA upstream 368511 2053187 ~ 2054534 (+) True AMCG00000752
AMCG00000764 mRNA downstream 4878 2467362 ~ 2519028 (+) True AMCG00000764
AMCG00000766 mRNA downstream 498005 2960489 ~ 2977911 (+) True AMCG00000766
AMCG00000769 mRNA downstream 534029 2996513 ~ 3011360 (+) True AMCG00000769
AMCG00000768 mRNA downstream 562034 3024518 ~ 3037733 (+) True AMCG00000768
AMCG00000767 mRNA downstream 593938 3056422 ~ 3061712 (+) True AMCG00000767
TU157662 other upstream 726798 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 822406 1599696 ~ 1600639 (+) False AMCG00000723
TU157377 other upstream 2081274 339640 ~ 341771 (+) False G125561
TU159397 other downstream 6154715 8617199 ~ 8620195 (+) True G127134
TU159756 other downstream 7685373 10147857 ~ 10154187 (+) False AMCG00000949
TU160309 other downstream 9537180 11999664 ~ 12011425 (+) True AMCG00001002
TU161370 other downstream 12707427 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 12946628 15409112 ~ 15420880 (+) False G128823

Expression Profile