RNA id: AMCG00000770


Basic Information

Item Value
RNA id AMCG00000770
length 1059
RNA type mRNA
GC content 0.64
exon number 6
gene id AMCG00000770
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 3052881 ~ 3055879 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GACGCCGGCTGTGATAAATGAATTGCAgttttactgtaaatgtatcGATTCGATATCCCCGCTACAAGGGGGCGCTGTGATGCGATACTGTTTCACTTGACGCCTCTGGACGCTGCGTGGTGTGACGTCATGACGCAGAAAGTATGCAGTGCGGAGTTGCTGAGAAGTTGTGAACTGTGGAACTAAAGCAAGGAGATGGCGTGTGCCGGACTGGGTCATCGCCTCGCCGCCTGCTTGTTGAACGTCTCGGAGGCGCGGAGGAAAGACATCGTGGACACGGTGGCCAGGGCGGCCCTCTACGACCAGCAAGGGCGGAGGCGCGAGGGGACGGCGGTGCTCAATATCTTCAATGACCACGACTATAACCGCTCGGTTATCACCATTGCCGCAGCCATCGACAAGATCGGCGGGGCGGTGCTGTCTGCCTGTGTGAAGGCCTGCGAACTGATCGACATGCGCCAGCACTCGGGGGTTCACCCCTGCATGGGCGCCGTGGACCTGGTGCCCATATACCCACTGGGCGAGAGCGTGGGACTGGAGGAGTGTGGCCAGGAGGCACGAGGGGTGGCAGCGAGCCTGACTGAACGCATCCCCGGCACCAGCGTGTTCCACTTCGGGTTTGCTGACCTGCCGCAGCGCCGTGGCCTGGTCCAGAGGCGGAAGGAGCTGGGCTGGTTCCAGCAGAACCCAGAGCTGAGCGCCATCAAGGCTGATGTGGGAGCGGCGCCAGGGAGGAGATACGGACTCACAGGGGTGCAGGTCATGGCGCTCCCGCACGAGGGCGCCGTGGAGATCGCCTGCAACGTGGAGAGCCTGGAGGGGCGGAGCGAGGGGCGCGAGGACTGGCCCTCGTATGACATCCGGGGCCAGACGTACTGCTACCCCCCGGCCTCCCTCATCGCGGCCCGCGTGGCACAGCTGGCGGCGCAGCACGGAGTCGCCACCCTGGGCACCGCGCTCGTGGGCTTCACGCCACAGGAGTGCCGCGGCCTGGCGGAGAGGGCGCTGCGGCAGGGGGTGGCTGAGTTCTGGAGGGAACAGCGCGAGGTGCACATGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158015 lncRNA downstream 494632 2557991 ~ 2558249 (-) True G126037
TU157974 lncRNA downstream 532661 2427941 ~ 2520220 (-) True G126005
TU157998 lncRNA downstream 590393 2460715 ~ 2462488 (-) True G126020
TU157778 lncRNA downstream 1225139 1822252 ~ 1827742 (-) True G125875
TU157743 lncRNA downstream 1475535 1575361 ~ 1577346 (-) True G125845
TU158101 lncRNA upstream 77997 3133876 ~ 3135913 (-) False AMCG00000777
TU158325 lncRNA upstream 494961 3550840 ~ 3552977 (-) True G126275
TU158314 lncRNA upstream 497168 3553047 ~ 3656561 (-) True AMCG00000804
TU158357 lncRNA upstream 618402 3674281 ~ 3676927 (-) True G126296
TU158437 lncRNA upstream 1188850 4244729 ~ 4245041 (-) True G126369
AMCG00000771 mRNA downstream 2865 3044167 ~ 3050016 (-) False AMCG00000771
AMCG00000765 mRNA downstream 515013 2520235 ~ 2537868 (-) True AMCG00000765
AMCG00000763 mRNA downstream 653526 2394089 ~ 2399355 (-) True AMCG00000763
AMCG00000759 mRNA downstream 726276 2262668 ~ 2326605 (-) True AMCG00000759
AMCG00000755 mRNA downstream 908244 2133482 ~ 2144637 (-) True AMCG00000755
AMCG00000775 mRNA upstream 9931 3065810 ~ 3078543 (-) True AMCG00000775
AMCG00000776 mRNA upstream 27576 3083455 ~ 3103231 (-) True AMCG00000776
AMCG00000778 mRNA upstream 66329 3122208 ~ 3123800 (-) True AMCG00000778
AMCG00000777 mRNA upstream 78314 3134193 ~ 3140489 (-) True AMCG00000777
AMCG00000785 mRNA upstream 125600 3181479 ~ 3205611 (-) True AMCG00000785
TU158081 other downstream 2930 3044257 ~ 3049951 (-) True AMCG00000771
TU158078 other downstream 10917 3036931 ~ 3041964 (-) True G126089
TU157989 other downstream 594998 2451868 ~ 2457883 (-) False G126017
TU158093 other upstream 75835 3131714 ~ 3133817 (-) False G126096
TU158094 other upstream 75835 3131714 ~ 3149252 (-) True G126096
TU158313 other upstream 596778 3652657 ~ 3656561 (-) False AMCG00000804
TU158503 other upstream 1580217 4636096 ~ 4636516 (-) True G126427
TU158856 other upstream 2516826 5572705 ~ 5573027 (-) True G126700

Expression Profile