RNA id: TU158101


Basic Information

Item Value
RNA id TU158101
length 1606
lncRNA type sense_over
GC content 0.52
exon number 3
gene id AMCG00000777
representative False

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 3133876 ~ 3140489 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NGTGGTGGCCGGCGTGGAGCAGTACCTGCACTTTGTGCCGTGGTGTAAGCGCTCCGAGGTGATCTCCCGCCGGACAGGCTTCTGCAAGGCGCACCTGGAGGTGGGCTTCCCCCCCGTGGTGGAGCGCTACACCTCCCTCGTCACCACGGTGCGCCCCCACCTGGTCAAGGCTAACTGCACGGATGGGAAGCTCTTCAATCACCTGGAGACGGTGTGGCGCTTCAGTCCCGGCATCCCAGGCTACCCTCGCACCTGCACCCTGGACTTTGCGATCTCCTTCGAGTTCCGCTCGCTGCTGCACTCCCAGCTGGCCACCGTGTTCTTCGATGAGGTCGTCAAGCAGATGGTGTCTGCGTTTGAGCGGCGGGCGGGCAAGCTGTACGGGCCGGAGACGTGCATCCCCCGAGAGCTGATGTTCCATGAGATCCACCACACATAGCCCCCGAGGGTGGGGTGGGTTGTGGTGGTAATGGGTGCTGCGCCTGGGCCCAGACCACCACAATTCCCTTACCCAGCACCCCACTGCGGCTGCATGCCTCTTTAGGCCTTGCAGTCTGGTCCCCTGGGCGCCCTGTGTCCAAGTGCCTCAGATTTTTGCACACTTCTaatctccccaccccccaatctTCTCAACAAGGCGTGTGACCTCGCTGGACGGACATCGGTGGGTCCAGACAGGTACTGGAACGGTCTTTGGTGTTGCTTACCACTCAGTGGATGGTCACAAGAGATGGGGACCCCAAACCCCAGTCTGCGGGTTTGATCTCACCAGAGCACCAGTGGACCCTAAAACCACGTGTCTACATGGACGACGGAAGGGGTTAGACAGTAGGTCCGCACCCATCGTCTGTAACAGGCTTGGGGTATGTTTGAGACCCAAGAAGGGATTTTTGATAGTGGCTCCGGTAGGTGTTTGAaactacaaattacaaattaattgtgtgtgtgtatccgaTGCTTCTCACCGATGTGTGTACAGTCTGTAAACCGAGTTCTTCtatcacgtgtgtgtgtgcgcgtgctcTATGCGTGGAGGCCGAGCTGAAGTGGCCGCATGTTTCCTCTGATCCGCAAACCCGCGGCTTCGGAAATCTGCGGTGACTGAATCGCACAACGCAGCTTTTGAAACCGCGGACGGACCGGATTCGGACATCCTGAGAGGGAAGGGAGTAGGGGATGAGAATTGTTGCATAAGAAGTGTGTAGTATTATTGTATTCAATGTGGTTTTATACTTCTGCCTGAGTTTTATAAGCCTTGTGTGCACGCGCTGTCTCCGTACACTTCAGGGCACAAGACTCGTGTCCATGTGTTGTGGATTTCTTTGGAAAGTGAAGAAGTTGCTGTGGAAGACTGATACCCAAACTGTAAACCCCTcacttgttgtttttccctttttatttttttaaatatagtgtatattgttcataatttatttagtttattaaaaacacatgtacataatTATATAGCACAGATTAAGCTGGTTAAACACTTTCtttattaacttttcttttGGTGTAATTgaggtttttaatgtttataagTCATGGATGGAGACATGCATCCTGATTGCACGgtttaataaactatttttcTATTAAAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158015 lncRNA downstream 575627 2557991 ~ 2558249 (-) True G126037
TU157974 lncRNA downstream 613656 2427941 ~ 2520220 (-) True G126005
TU157998 lncRNA downstream 671388 2460715 ~ 2462488 (-) True G126020
TU157778 lncRNA downstream 1306134 1822252 ~ 1827742 (-) True G125875
TU157743 lncRNA downstream 1556530 1575361 ~ 1577346 (-) True G125845
TU158325 lncRNA upstream 414927 3550840 ~ 3552977 (-) True G126275
TU158314 lncRNA upstream 417134 3553047 ~ 3656561 (-) True AMCG00000804
TU158357 lncRNA upstream 538368 3674281 ~ 3676927 (-) True G126296
TU158437 lncRNA upstream 1108816 4244729 ~ 4245041 (-) True G126369
TU158504 lncRNA upstream 1501454 4637367 ~ 4637640 (-) True G126428
AMCG00000778 mRNA downstream 10076 3122208 ~ 3123800 (-) True AMCG00000778
AMCG00000776 mRNA downstream 30645 3083455 ~ 3103231 (-) True AMCG00000776
AMCG00000775 mRNA downstream 55333 3065810 ~ 3078543 (-) True AMCG00000775
AMCG00000770 mRNA downstream 77997 3052881 ~ 3055879 (-) True AMCG00000770
AMCG00000771 mRNA downstream 83860 3044167 ~ 3050016 (-) False AMCG00000771
AMCG00000785 mRNA upstream 45566 3181479 ~ 3205611 (-) True AMCG00000785
AMCG00000784 mRNA upstream 97508 3233421 ~ 3237636 (-) True AMCG00000784
AMCG00000788 mRNA upstream 140345 3276258 ~ 3314125 (-) True AMCG00000788
AMCG00000794 mRNA upstream 375206 3511119 ~ 3517210 (-) True AMCG00000794
AMCG00000795 mRNA upstream 409376 3545289 ~ 3568649 (-) True AMCG00000795
TU158093 other downstream 59 3131714 ~ 3133817 (-) False G126096
TU158081 other downstream 83925 3044257 ~ 3049951 (-) True AMCG00000771
TU158078 other downstream 91912 3036931 ~ 3041964 (-) True G126089
TU157989 other downstream 675993 2451868 ~ 2457883 (-) False G126017
TU157991 other downstream 675993 2451868 ~ 2457883 (-) True G126017
TU158313 other upstream 516744 3652657 ~ 3656561 (-) False AMCG00000804
TU158503 other upstream 1500183 4636096 ~ 4636516 (-) True G126427
TU158856 other upstream 2436792 5572705 ~ 5573027 (-) True G126700
TU159187 other upstream 3576045 6711958 ~ 6733817 (-) False AMCG00000888
TU159288 other upstream 4494002 7629915 ~ 7645722 (-) True G127039

Expression Profile