RNA id: AMCG00000778


Basic Information

Item Value
RNA id AMCG00000778
length 522
RNA type mRNA
GC content 0.52
exon number 4
gene id AMCG00000778
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 3122208 ~ 3123800 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGGGAGGGGGCTCTGGCTGCCTCGGCGTTCAGAAAGTTCCTCCCGATGTTCGACCGTGTCCTGGTGGAGAGGTTCGCCGCAGAGACGGTGACCAAGGGTGGGATCATGCTGCCGGAGAAATCCCAGGGCAAAGTGCTGCAGGCCATGGTGGTGGCGGTGGGGCCTGGCAATGTGAACAAGGATGGCAATCTGCAGCCGGTCTGTGTCAAGGTGGGAGAGAAGGTCCTGCTGCCCGAATACGGAGGAACGAAAGTGTCGCTGGATGACAAGGAGTACTTCCTGTTCCGCGATGGGGATATCCTGGGAAAATACGTGGAGTGAAGCCCTCGCTCGTGACCAGCTGTCCCATTCCACCATCAagagcgaggaggaggaggagctctgtgttgtatttgtattgcgttctgttttttctatttcattcaaatgtaaatactaATTTTCTtttgtcataataataaaattgactATTGAACCCTGGGATAGGGTGTGATTCTGAGTCTTGTCAGGTGTGTTATT

Function

GO: NA

KEGG:

id description
K04078 groES, HSPE1; chaperonin GroES

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158015 lncRNA downstream 563959 2557991 ~ 2558249 (-) True G126037
TU157974 lncRNA downstream 601988 2427941 ~ 2520220 (-) True G126005
TU157998 lncRNA downstream 659720 2460715 ~ 2462488 (-) True G126020
TU157778 lncRNA downstream 1294466 1822252 ~ 1827742 (-) True G125875
TU157743 lncRNA downstream 1544862 1575361 ~ 1577346 (-) True G125845
TU158101 lncRNA upstream 10076 3133876 ~ 3135913 (-) False AMCG00000777
TU158325 lncRNA upstream 427040 3550840 ~ 3552977 (-) True G126275
TU158314 lncRNA upstream 429247 3553047 ~ 3656561 (-) True AMCG00000804
TU158357 lncRNA upstream 550481 3674281 ~ 3676927 (-) True G126296
TU158437 lncRNA upstream 1120929 4244729 ~ 4245041 (-) True G126369
AMCG00000776 mRNA downstream 18977 3083455 ~ 3103231 (-) True AMCG00000776
AMCG00000775 mRNA downstream 43665 3065810 ~ 3078543 (-) True AMCG00000775
AMCG00000770 mRNA downstream 66329 3052881 ~ 3055879 (-) True AMCG00000770
AMCG00000771 mRNA downstream 72192 3044167 ~ 3050016 (-) False AMCG00000771
AMCG00000765 mRNA downstream 584340 2520235 ~ 2537868 (-) True AMCG00000765
AMCG00000777 mRNA upstream 10393 3134193 ~ 3140489 (-) True AMCG00000777
AMCG00000785 mRNA upstream 57679 3181479 ~ 3205611 (-) True AMCG00000785
AMCG00000784 mRNA upstream 109621 3233421 ~ 3237636 (-) True AMCG00000784
AMCG00000788 mRNA upstream 152458 3276258 ~ 3314125 (-) True AMCG00000788
AMCG00000794 mRNA upstream 387319 3511119 ~ 3517210 (-) True AMCG00000794
TU158081 other downstream 72257 3044257 ~ 3049951 (-) True AMCG00000771
TU158078 other downstream 80244 3036931 ~ 3041964 (-) True G126089
TU157991 other downstream 664325 2451868 ~ 2457883 (-) True G126017
TU158093 other upstream 7914 3131714 ~ 3133817 (-) False G126096
TU158094 other upstream 7914 3131714 ~ 3149252 (-) True G126096
TU158313 other upstream 528857 3652657 ~ 3656561 (-) False AMCG00000804
TU158503 other upstream 1512296 4636096 ~ 4636516 (-) True G126427
TU158856 other upstream 2448905 5572705 ~ 5573027 (-) True G126700

Expression Profile