RNA id: AMCG00000783


Basic Information

Item Value
RNA id AMCG00000783
length 2422
RNA type mRNA
GC content 0.52
exon number 9
gene id AMCG00000783
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 3226313 ~ 3233199 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGGCCCGGAGCCCCTGGGAGACCCCCATGCCGCTGATCGTGAGCGGGCCGGACCTCTGCCTCCGGGTGGACATGGACACGGTGGAGCGGCTGTCCCGGATTACCGCCGCCGTTACAGGACAGGGAAGGGCTGGGTTTGAACTGGGGTGCACTGTGCAGTCCAAAACCAAAGGCCTGTGGATTTTGCCAATCCCTCACCCCACCAAACCCAACCACACTATCCTCCTGGTGGACACAGAGGGGCTCGGCGATATCGAGAAGGAGAGGAGGTGCTTCACGTTCCCGATGCCAGCCCCTGAAGACAGGCTGTCTGATCTGGAGCAGGCGGACTCGGAGGAGCTGAGCGAGGTGTTCATGGAGCGTCTGCAGGAGCTGATGGAGCACGTGTTCACTGCAGCCCATCCCAAAACCCTGGAGGGTGTGGCACTGAACGGCAAAGCCTGGGCCGGCCTGGCAGTCGAGTACACCAAGGCCATTGACAGCCGAGAGGTGCCCTGCATCGAGAGCTCCCTCAGCCTGGTGGTGCGGAGGGTCAACGAGGACGCCAAGTCCGACAGCGTGTTCCTCTACACCTCCGCCATGAAGAGCACCCTTTCCAGGCTGCCCGTCCCCGTGGCCCAGCTCGCCCACACCCACCAGGACAGCGCCACTGCCGCCCTCCGTAACTTTGCAGAAAAGTGCCTTCTGGACCGAGACAACGAGTGTGCCAAGGAGCTAGGGGTGTTCCTGGAGAAGCAGCTGCAGGAGTGGTCCCGCCGCAACGACAGCGAGTCCGAGATGTTCTGCCGGGACCTCctgaaggaggagaggaagcCGCGCCGCAATTTCCTGAAGCCAGGTGGCCACCAAGACTTCGTCCGCATGGTGGAGAGTGTCAGGCAGGCCTACCAAGACACCCCCAACAAGGGGCCCAAGGCGGAGGAGGTCCTGTCCCGGTTCCTGAGTGAAGTTCAGAGCGACGAGGAGGAGATCCTCATGGTGGACAGCAGCCTCAGCGAGATGGAGAAGCTGAAATCCAGACAGGAGACCGACCGCAAGGTTCTAGAGCAGGAGAACAGAGTCCTGAAGGAGAAGATGCAGTTCATGGAAACGTCGTTTGAGTCGGCCATGAAACAGAACGAGGACACGATGGATATTCTGCTGAGGAAGATCACAGACCTGGGCTCGGAGGCTCAGAACTACTCCCAGATGGTGCAGGCCCTGGAGGAGCGCGTCCAGCAGCTGCGGCAGCACAGAGACCGCCCCCGGCATAATCCCCCGGCCTCAGCCCGAGAGTGCCTCGTGATGTGAGGAGACCTGGGCTGGGCTTGTGATCCGGAGTGACCAACTTGGGAAGGAAGAGCAGGGACTTCCCTGTGCTGACCCCCCTGGGACCTTCTTGTATAGAAGTGCAGTAGACCGTACTTAAATATAAACTAATATCAAGCACATGTGTGCACTGGGACTTTTTATGCCCTCCTAGTTCTCGATTGCCAGTGTGTTCAGGCTTTAGTCTTGGTGCGTCtgttgatttgtgtgtttttatctaTATTCCTGTTTAAAGAATTGGGTTTTTTCCTACTTTTGTATTGCATATGTGAAAGTCAGTGCCTTTCAGTAAACCTTTTGAGAAAtatgaaacagaaagaaaaggatgATTTTCAGAGAGACACATTGGATTAGTAAGTAAACATGGGCCATTCCTGCAGGGTTCCCTCGTGTCTCGAGCTCCAGCTCAAGTTGCCCGGGTTGGTAGATGTTCTCTGCTGGTCTGGAATCCACACCTCTGAAAAGGACATTGAAGGACTGTAGGGCAGAATGGGCTTGACTGCTCGAATTGTACTGGTCAGTTCATGGTTATCTGAATATTCCTTATGAAAACCAGCAGACCTTTATAACACGGCtgtttctgatatttttctACCTAAATTgcttatttacttattcatgttatttcttGACTTTCAGTGCCCTTTTCCTTTATATATTCACATGTGGTATAATTTAGTGTGCAGCTGCTTTAATTACTAGCTTGATTGATTTTGACTCTGATTGGTTGCCTTTTCAAAGGCACCACACCTGGTGTAGGAGTTCTGCAACCAGTCAGGTTTTAATTAGGGGAATCACTGTCCAATAATTAAGCCAATTCCAGTGCTCTTTAGAGTGGAGGTAGTGCAGCTGAAATCTGTAGGCAGAATTGGCTGTACGGTTGGATCTGAGTATAGACCAAAAGTAGATTAGAGTACAAGAGCCGCCTAGACCAGAGTAAGTGGGTTTGGCCGTGGCTCAGCTACTCTTAGAGTGGCTAGCCTGATTGATAGGGTGCTACAGAGCATAAATGTGTATCCACTGTATTTGACTTAGTTTATTGTAgtggttttcatattttaacccattttatacttttaatttgcaatccctttgtctttttattccctgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158053 lncRNA upstream 142726 3081746 ~ 3083587 (+) True G126068
TU158038 lncRNA upstream 157850 3010243 ~ 3068463 (+) True G126054
TU158031 lncRNA upstream 341129 2870916 ~ 2885184 (+) True G126050
TU158024 lncRNA upstream 459774 2766255 ~ 2766539 (+) True G126044
TU158014 lncRNA upstream 668056 2557992 ~ 2558257 (+) True G126036
TU158251 lncRNA downstream 322367 3555566 ~ 3558424 (+) True G126215
TU158279 lncRNA downstream 419474 3652673 ~ 3656581 (+) True G126240
TU158294 lncRNA downstream 437603 3670802 ~ 3673176 (+) True G126248
TU158362 lncRNA downstream 492721 3725920 ~ 3730056 (+) True G126301
TU158436 lncRNA downstream 1011533 4244732 ~ 4245036 (+) True G126368
AMCG00000781 mRNA upstream 1032 3214160 ~ 3225281 (+) True AMCG00000781
AMCG00000773 mRNA upstream 45195 3158416 ~ 3181118 (+) True AMCG00000773
AMCG00000772 mRNA upstream 70804 3142257 ~ 3155509 (+) True AMCG00000772
AMCG00000774 mRNA upstream 93118 3122348 ~ 3133195 (+) True AMCG00000774
AMCG00000767 mRNA upstream 164601 3056422 ~ 3061712 (+) True AMCG00000767
AMCG00000780 mRNA downstream 7036 3240235 ~ 3249229 (+) True AMCG00000780
AMCG00000782 mRNA downstream 18611 3251810 ~ 3258580 (+) True AMCG00000782
AMCG00000779 mRNA downstream 28982 3262181 ~ 3263241 (+) True AMCG00000779
AMCG00000787 mRNA downstream 81669 3314868 ~ 3373247 (+) True AMCG00000787
AMCG00000786 mRNA downstream 145239 3378438 ~ 3385899 (+) True AMCG00000786
TU157662 other upstream 1530066 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 1625674 1599696 ~ 1600639 (+) False AMCG00000723
TU157377 other upstream 2884542 339640 ~ 341771 (+) False G125561
TU159397 other downstream 5384000 8617199 ~ 8620195 (+) True G127134
TU159756 other downstream 6914658 10147857 ~ 10154187 (+) False AMCG00000949
TU160309 other downstream 8766465 11999664 ~ 12011425 (+) True AMCG00001002
TU161370 other downstream 11936712 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 12175913 15409112 ~ 15420880 (+) False G128823

Expression Profile