RNA id: AMCG00000789


Basic Information

Item Value
RNA id AMCG00000789
length 3860
RNA type mRNA
GC content 0.59
exon number 25
gene id AMCG00000789
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 3437283 ~ 3482542 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctcaccccGCCTATCCACAGGATAGCTGTGTCAAGACCACTgtggatgagagagagagagaggaatctCTTACTGCCTAACCTCTCCTGCACACGAAAAGGAGCTGTGACCCAGCAGAGGACCGCTCCCCGGTGTCTCCAAAAACGGACTTAGGTGCGGACGCACTCACAACCCCACCCTTTCTCCAATCCCTCCATTCCCTATCCTCtgtctcccccctcccccgcccctCAGCCCGCGTGCCGTGTCCAGAGAGGAGGATGAGAGCCCCGAGCAGCACGGCCTGCATCACCCCTCCCCGGGGATAACCGAGAACCAGCGCAGAGGCACCGGGAAGCCACCAAGATGGGCGACAGGAGCTGGGTGTGTCTGAGCCCGGCGGAGTTCGCCCAGCTGCAGCAGTACACCGAATattcaaCTAAGAAGCTGAAGGATGTGTTGGAGGAGTTTCACGGTGATGGAGTTCTGTCCAAATATAACCCTGAGCAGCCCATCGACTATGAGGGGTTCCAGCTCTTCATGAAGACGTACCTGGAGAACGATATTCCCGAGGAGCTGTGCCAACACCTCTTCACCTCCTTCAAGCGCAAGACCGGGGAGAGTTCCCCCGAGCAGCCCCGCACCGGAGGAGGCCTGCTGGAGCCCCGATCGATCGATGCTGGCATCTCTATTCAGACTGAAGTAGCTTGTGCCCCTATTACAGGTATGAATGGAAAGAGCATCCTCACTGCCATGGGACGCCACACCCCCGATCAGGCTGCGGTGATGGCGACTGCCTCTGGGGTCAccgcctccccctcctcctcccgctCCTCGTCTCAGCGCTCAGGCACCGGCGGCAATACGCCATGCGGCCAGCAGAGGTCACCCTGCAACCAGCAGAAGCTGACGGGGGGCGGCATAGGGGCGGCGTTCAGTGCTCTGGCCCCCTCCAAGACCCCCTGCATCCCACTCCTCGCTTCCCAGTCTCCAGACTGCAACAACACTGAAAGGCCCGCGTCGTTGAGGAGGAGCCAGTCCCCACAGAAGGGACCCCCACAGCCGCCGCCCCCCCAGGTGGTCTTTCTGAAGGACATCGTGTGCTACCTGTCACTGCTGGAGAGGGGCACGCCGCAGGACAAACTGGAGTTCATGTTCCGGCTGTACGACACAGATGGGAACGGCCTGCTGGACAGCTCGGAGCTGGATCGCATCATCAATCAGATGGTCCACGTGGCAGAGTATCTGGAATGGGACTCCACAGAGCTGAGGCCGATCCTGAAGGAGATGATGGAGGAGATCGATTACGATCGGGATGGGACGGTGACCCTGGAGGAGTGGATCAGAGGAGGCATGACCACCATCCCTTTACTGGTGCTACTGGGCATGGAGACGAACGTGCGCGAGGACGGGCAGCACGTCTGGAGACTGAAGCACTTCAACAAGCCGGCCTACTGCAACTACTGCCTCAACATGCTGCTGGGCGTGCGCAAGCAGGGCCTGTGCTGCTCCTTCTGCAAGTACACCGTCCACGAGAGGTGTGTGTCTAAAGACATCGCCGCCTGCATCAGCACCTACGCCAAGTCCCGCCGGCACACGAACGTGATGCAACATGTGTGGGTGGAGGGGAACTCGCCCACCAAGTGTGACCGCTGCCATAAGAGCATCAAGTGCTACCAGGGCCTGACAGGGCTGCACTGCGTGTGGTGCCAGATCACACTGCACAATAAGTGTGTATCCCACGTGAAGCCAGAGTGCGATGGGGGTCCCCTGAGAGACCACACCCTGCTGCCCTCCTACATCTGCCCCGTGGTGCTggacCGTCAGTCCAATGCAAAGCGCAGCGAAGGGGAGTCTCCCTCCAGCACCAGTCCAGATGACAACACTCAGAGCTTTAAATTCACCGGCGATGGTCAGGGGCTGCAGATCACTCCTCTGCCCGGGACGCACCCCCTCCTGGTCCTGGTCAACCCCaagagtggtgggaggcaagGTGAAAGGGTGCTGCGAAAGTTCCAGTACCTGCTGAACCCCAGGCAGGTGTACAGTCTGGACCGGGGCGGGCCCATGGCGGGGCTGAACTTCTTCCGTGACGTCCCTGATTTCCAGGTTCTCGTGTGTGGGGGAGACGGCACCGTCGGCTGGATCCTGGACTGCATTGACAAGGCCGGCTTCGCCAGGCATCCTCCGGTGGCGGTGCTGCCCCTGGGCACGGGCAACGACCTGGCACGCTGCCTGCGctggggaggagGCTACGAGGGGGGCAACCTGATGAAATTCATGCGGGACATAGAGCACAGCACAGACGTGGTCCTGGACCGCTGGAGCATCGACGTCATTCCCAACAACAAGGAGGAGAAGGGCGATCCGGTCCCCTACAGCATCGTCAACAATTATTTCTCCATCGGCGTGGACGCCTCCATTGCACACCGTTTCCACCTGATGAGGGAGAAACACCCAGAGAAGTTCAACAGCAGGATGAAGAACAAGCTGTGGTACTTTGAGTTTGGCACGACGGAGACCATCTCTGCCACCTGTAAGAAGCTCAACGAGAGCCTTGAGGTGGAGTGTGACGGCATCATCCTGGACCTCAGCAGCACCTCCCTGGAGGGCATCGCTGTCCTGAACATTCCCAGCATGCACGGTGGCTCCAATCTGTGGGGCGAGACCAAGAAGAGGCGCAACTACAACCGCATGAGCAAGAAAGTGCCAGAGAGGGCGCCGGTGAGCACGGTCACCGACCCCAAGGAGCTCAAGTTCTGCGTTCAGGATCTGAGTGACCAGCTGTTGGAAGTGGTGGGTCTGGAGGGGGCCATCGAGATGGGTCAGATCTACACGGGGCTCAAGAGTGCAGGCCGGCGGCTGGCCCAGTGCGCCAGTGTCACTatcagGACATCTCGATTGATGCCTATGCAGATCGATGGGGAGCCCTGGATGCAGCCCCCCTGTGCGATTAAGATCACACACAAGAACCAGGTGCCCATGCTGCTAGGACCCCCCCAGAAGActcccttcttcttcttcaagagGCGAAACAGGAGCCGGGACTAGAGGAGAGGGACCCCCGACAGCCCTGTCGCCAAGGAGGGTCTCCCCTTGCAATGGACGAGGGAGGACAGGAGGGGATTGTAGTTATAGGTCCAACACTAGGTGGGGGGAAACAGGGCCACCCTTCACCTAACCTCCCTGTGAACCCATCCCACTAccagagacacactgactgctCTTATTAACCAGCCTCTTGAGACGACCCCGAGGGAACAGTCACCTTGTCTCTCCGTAACACgtcacacactccctcacagCGTTACCCCACACACCAGCCCAGACCAAGCCTGCCCCTCGGCTCAAACCCTCCTCTCTCCTCGCTCTGCTCCCCCCTTCTCACTATACTGATGGACCGACTATAGAGGATCTTCTTGCACCCTTGCTTTTACACCCCCCTTTAGGTTgtgagaacaaaaacacaacgaACAAGGAAAAGATTCTATTGTGCGGCTCTTCGGCTGGCGGAAGCAGATGTATCTGGATTGGATTCCAAATTGGATTGACCACGAAATGCTATGGCCGGAGAGCCGAGGAGATGGGATGCGAGTGGGGGGTGCTCTCAATTGCTAGAAGTGGAAGAGATAGTGTGAGGGAAGGGAAGGCAGAGAATTAGCGCGTTGTGTTTTTTTACGAGGGAGGGGGGTGTGAGCTGGGAGAGCCGCCCGAGACCGGGAGACATGTTCTGGCCATTCTAATGAGACGGGCCAACAAGCGCTTCTCTTtgaagaaacaataaataatgaatcaGTGGAGGCTTTGTATTTATTCCTGTTCCTCTCCAGAGCCTGAGTAAACTCCAGAACCACGACGCAGCgagaggaaaaacagaaatc

Function

GO: NA

KEGG:

id description
K00901 dgkA, DGK; diacylglycerol kinase (ATP)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158053 lncRNA upstream 353696 3081746 ~ 3083587 (+) True G126068
TU158038 lncRNA upstream 368820 3010243 ~ 3068463 (+) True G126054
TU158031 lncRNA upstream 552099 2870916 ~ 2885184 (+) True G126050
TU158024 lncRNA upstream 670744 2766255 ~ 2766539 (+) True G126044
TU158014 lncRNA upstream 879026 2557992 ~ 2558257 (+) True G126036
TU158251 lncRNA downstream 73024 3555566 ~ 3558424 (+) True G126215
TU158279 lncRNA downstream 170131 3652673 ~ 3656581 (+) True G126240
TU158294 lncRNA downstream 188260 3670802 ~ 3673176 (+) True G126248
TU158362 lncRNA downstream 243378 3725920 ~ 3730056 (+) True G126301
TU158436 lncRNA downstream 762190 4244732 ~ 4245036 (+) True G126368
AMCG00000786 mRNA upstream 51384 3378438 ~ 3385899 (+) True AMCG00000786
AMCG00000787 mRNA upstream 64036 3314868 ~ 3373247 (+) True AMCG00000787
AMCG00000779 mRNA upstream 174042 3262181 ~ 3263241 (+) True AMCG00000779
AMCG00000782 mRNA upstream 178703 3251810 ~ 3258580 (+) True AMCG00000782
AMCG00000780 mRNA upstream 188054 3240235 ~ 3249229 (+) True AMCG00000780
AMCG00000792 mRNA downstream 8199 3490741 ~ 3504965 (+) True AMCG00000792
AMCG00000791 mRNA downstream 35180 3517722 ~ 3522353 (+) True AMCG00000791
AMCG00000793 mRNA downstream 50597 3533139 ~ 3547238 (+) True AMCG00000793
AMCG00000790 mRNA downstream 86871 3569413 ~ 3575908 (+) True AMCG00000790
AMCG00000798 mRNA downstream 100638 3583180 ~ 3592142 (+) True AMCG00000798
TU157662 other upstream 1741036 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 1836644 1599696 ~ 1600639 (+) False AMCG00000723
TU157377 other upstream 3095512 339640 ~ 341771 (+) False G125561
TU159397 other downstream 5134657 8617199 ~ 8620195 (+) True G127134
TU159756 other downstream 6665315 10147857 ~ 10154187 (+) False AMCG00000949
TU160309 other downstream 8517122 11999664 ~ 12011425 (+) True AMCG00001002
TU161370 other downstream 11687369 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 11926570 15409112 ~ 15420880 (+) False G128823

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU275822 True 3127 lncRNA 0.39 3 CI01000056 1995150 ~ 1999442 (+)