RNA id: AMCG00000790


Basic Information

Item Value
RNA id AMCG00000790
length 3404
RNA type mRNA
GC content 0.45
exon number 10
gene id AMCG00000790
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 3569413 ~ 3575908 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gggattctgcagatctgcgcaggaTCGCTTGGCTGGCTGCAGCGCTTTCACTTTCGCTTCCTGGATGATGGCTCGCTAGTTTTCCTGCAGTTGGAGCAGCAGGTCAAACAGAAACTGAACTGAAGGGCGACGACAACGCAGTTCAATTTACTCGGGAAATCACGTCCACTGCGCTGCTGTGCGAGCACAACATTAAAGCCACACAGGCGGTACTGTGCGGGAGAAAGCAaagttttatGTCTGCAGGTTGAGCACCAAGACACAGTGacTGGATTCAAGACCTGAACACAAGACCATGGCTACAGAAGGTTTAGAGATTCCCATTACGCCTGAGATTGGTCAAACCCTGAGCCAACACCAAAATCTCAACCCTGTCGTCCAGAGGAGGTTTGGCTGCAGGGCTGCCCTCAGGAACGTTGAAGGCACGGGGGGGTCTTCCTGGAGCAGCTCGAATGGGTCCTTCAAAGCCGAAGAGAGGTACTCAGTAACGCTGGTCAAAGGGCTGAAGATCTCCGTCTGGAAGGATGACCTCACTAGACACCAGGTGGAGGCTGTGGTCAATGCGGCTAATGCTAGACTAGACCACTGTGGTGGCCTTGCTGAAGCCCTGTCTAAAGCGGGTGGGccagaaatacaagaaaatagcAACCACTTAATTAGCAAAAATGGATGTATAGCTACAGGAGATGCAGTCGTCACAACTGCGGGGAAACTTCCATGTCAAAAAATTATCCATGCGGTAGGACCTCGTTGTAGGCCTCATCCAGATCAAGAAGACATTAAAAAAGCTTCAGGTCTTTTAGAAAAAGCTGTTAATAGTATCCTTAAGAAGGCAGAGGAGCAGAGATTTAAATCAGTTGCCATTCCTGCTCTGAGCTCGGGAATATTTAACTTTCCCCTGCCTCGATGTGCGGAAGTCATTGTGTCTACACTTAAAAAGTATCATGACAATCAATATTCAAAGGCCAGGGGTTTAGAAATCCACTTGGTCAACAATGACGAGCCTTCAGTGTGTGCAATGGAGAAAGCCTGCAAAGAAATTCTCATCCCAAGTAAGTCTTACAGTCAGGCTGCCGGGAGCCCCTCTACTTCAGTGCAGATTGGAAATGTCACCCTGCACGTCAAACAAGGAcgcattgaaaaagaaaagGCAGATGTCATTGTGAATACAGTAGGTACTGATCTTAAATTGTCATTGGGCAACATCTCAAACTCGATTCTGAAATCTGCTGGTTATGAGCTGCAGAAAGCTTTGTATCAATATCAGAATACTCCAGTCTATGGGTCTGTCTTTAAAACTGAAGGATTTTACTTGGATTGCAAAGCTGTGTATCATACAATCTGTTGTTACTATAGAGATCGCAATGCCTCAAAGATACTTGAAACTATAATGTTTAACTGCCTGATAATGGCAGCAGGTGAACACATGAGATCCATCGCATTCCCTGCCATTGGCACTGGTAATCTGGGGTTTCCACGTGATGAAGTGGCCCGGATAATGATCGGCCAGTGTTTCAATTTTGCTTACAATTTCCAAGGGAAGAAACTTgatgttcattttgtaatttttcctGGTGACAAAGAGAATCGCAAGGCCTTTGAAAAAACACTGAGCGATTTTCAGAACACAGGCAATCCCAAAGGTTCATTTGATCATTTTTCTAGTAGTTACCGAGGTGCCGAGGGGCGTTCTGCCGCACAGTCGCGCGATCTTCAGTGGCCTAGTATTGTGCTCTCAGATGGATCTCACGAAGGACAAATGGAAGCAAAGAAATGGATTACCAACACACTGCTTCAAGAGCGTGAAACCCTCACCATAGACAACAACAGTGTTTTCTTCTTTGGCCAGAGGGAGCATGACGAATTGTTGAGTTTCCAGACCATTCACCGTGTGACCATTAAAGTGATGATCAGCAATGGAAAGGCCAGTCTGAGGATTGTGGGACCCCCTCGGGGAGTGGTGGCCGCAGCGCTGGCAGTCGAGTTGCTGTGCTGCCAAGTACAAGAAGAATTTGCGACATGTGAAGAGATCGAGATGTTGCAGTCTTTGGTTCAGTGGCATTGCAACGCCTTACCAGAACTGGCAGAACCGGAGAACAACGCCACTTTGGAAAAAGCCTACTGGGCAGAACATACCTCAAAGACCATTAACGTGAAGGGCAGTACAGTTAACGTTTTGTTTAGAGACAAGAAAGTCGTTGATCACCTAGGAAAGCGTCATGACATTGAAAGAAGATGCCTGTTAAATGTTGACTATACCAAGTTTGGGAAAGGCTCAGACGCATCCTTCCATAAACGAACCCCTGAAAACAGAGCTGGACACTCAAAGAGGACCAAGTTGTTCAATGAAGCCGGTCTTGAGATTGTCACAATTGAAAAGATTGACAACCCGCTTCTGGAAGGGCATTTCCAAGTAAAGAGAAATTTCCTGTCAGCCAAACCGGAAACCATGTACCAGTCAGTCCCGGCCCAGTTCTGTGACCTGGTCTGCCGGGCTGGATTTCACAGACTGTACTCGCAGCCACGTGaagaaaagtTTGGAGCTGGCATATATTTCTGTAGGAAACCCCCCACCCTCAGTTACCAGGAAGATCCTTTTGGGGCAGATGAGTTCATCTACATCTTCGAGGCGCAGGTCCTGACTGGAAAATCCACCAATGGCTCCCCGGGTTTGATTGTGCCCCCTGTCCTCGGGACAGACCCTCTTATACTGTATGACAGTGTTACGGGGGGAACACACACAGCGGTCATTTTCAACAGTCGCCAGGCCTACCCTGAATATTTGATCACTTGCAGAAGGGTGAGGGGTAAGACCACAGTGTAAAGTGTAAAGATATAATACAGACTAGGGTAAAGATCAAGCGAAGAggtgatattttttgtttagggATTATAATCATctaccatttaaaatacataaagaacaAACTCATAGAATACACATATtagatttaatcaaaactcttcTCAGTATTTACTTCTGGataatttttctctctccatacattttgattttctaAAGACCTCTTTGTACACTTCATGGTTAATCCGactcatatgtatatattaactATAGCTGATCGGGATGCTGCCGAGTGTGACTGCTGTGTTTGAAATGCTCCAATTATGTTGTAGTATTGGAGGATTCACCAGCACAGATAAAGCATTTTAACATGTCTTTCTGTATGCAGTTCAACCCACAGTTCACCtagaaatacaatgtatatgCTTAAAGAAACACTGGGTTTATCAAGGGTAATTAAGGGCAATGTAATTGATATGCATATGTGATTAAAAAAGTACAGTGTAGATACAAATGTACTATACTTGGATGTGTGGCATATTCTCTactatatcaataaaataattctgggtatattgtttcttttttcaaatcGTATACT

Function

GO: NA

KEGG:

id description
K15260 PARP9; poly [ADP-ribose] polymerase 9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158251 lncRNA upstream 10989 3555566 ~ 3558424 (+) True G126215
TU158053 lncRNA upstream 485826 3081746 ~ 3083587 (+) True G126068
TU158038 lncRNA upstream 500950 3010243 ~ 3068463 (+) True G126054
TU158031 lncRNA upstream 684229 2870916 ~ 2885184 (+) True G126050
TU158024 lncRNA upstream 802874 2766255 ~ 2766539 (+) True G126044
TU158279 lncRNA downstream 76765 3652673 ~ 3656581 (+) True G126240
TU158294 lncRNA downstream 94894 3670802 ~ 3673176 (+) True G126248
TU158362 lncRNA downstream 150012 3725920 ~ 3730056 (+) True G126301
TU158436 lncRNA downstream 668824 4244732 ~ 4245036 (+) True G126368
TU158587 lncRNA downstream 1300959 4876867 ~ 4880503 (+) True G126500
AMCG00000793 mRNA upstream 22175 3533139 ~ 3547238 (+) True AMCG00000793
AMCG00000791 mRNA upstream 47060 3517722 ~ 3522353 (+) True AMCG00000791
AMCG00000792 mRNA upstream 64448 3490741 ~ 3504965 (+) True AMCG00000792
AMCG00000789 mRNA upstream 86871 3437283 ~ 3482542 (+) True AMCG00000789
AMCG00000786 mRNA upstream 183514 3378438 ~ 3385899 (+) True AMCG00000786
AMCG00000798 mRNA downstream 7272 3583180 ~ 3592142 (+) True AMCG00000798
AMCG00000797 mRNA downstream 62262 3638170 ~ 3651877 (+) True AMCG00000797
AMCG00000799 mRNA downstream 80959 3656867 ~ 3660538 (+) True AMCG00000799
AMCG00000806 mRNA downstream 110351 3686259 ~ 3698536 (+) True AMCG00000806
AMCG00000805 mRNA downstream 186911 3762819 ~ 3763343 (+) True AMCG00000805
TU157662 other upstream 1873166 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 1968774 1599696 ~ 1600639 (+) False AMCG00000723
TU157377 other upstream 3227642 339640 ~ 341771 (+) False G125561
TU159397 other downstream 5041291 8617199 ~ 8620195 (+) True G127134
TU159756 other downstream 6571949 10147857 ~ 10154187 (+) False AMCG00000949
TU160309 other downstream 8423756 11999664 ~ 12011425 (+) True AMCG00001002
TU161370 other downstream 11594003 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 11833204 15409112 ~ 15420880 (+) False G128823

Expression Profile