RNA id: AMCG00000792


Basic Information

Item Value
RNA id AMCG00000792
length 5322
RNA type mRNA
GC content 0.50
exon number 11
gene id AMCG00000792
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 3490741 ~ 3504965 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTTGatgtgggtttttttttctttttggtggTGGTGAATAAGGGGGGTTGCTTGCATTTAAGAAgacttttaaagttttttgttgAGCATTAATTATACAATGTGCGTCTTAATTCTGTGAATAAACTTCTAATTATTAGAATACTGATTACAATACAGcctatattttcaaaacatctagtatgtttaaataaattgaggGGTCAGGCACAATTTAGTAATAAGTATTTCTAGACTTTACCTAGTTCAACGTCactttttatatacagtttaaGTGTGTGTATAGTATATGCATGAGTAAAGTATTTATTGCACCGTTCTGCAGTTCTAGAAGTTGCAAACTAGAAAGGAGCGAATTTATGGTCATGCAGCAGTGAACTTACTGGACAATATGTAACCTCGAGTTAGAGAATAACTCGAACTATTGCACAAACACCGGAGCCGTCTTCTCCGCCGGCGGGGGTCCAACCTGTTGGTCCATCAGTTCAAGTTGACTCGGGAGTTTTTAAATTGCTCTGACGTGCACAACTGCGCACACAGCGCCTGCACGGTTCAGTGCGTCTGcagaaaatcaaataaagcGTGCAGTTGGGTTATAGTGCTGGGGTCTCTGAGAGCTGATCTTTATGAAGCTCCAGCATGTGCGATTGTGTGGTAAATGTGCAGCTGGCGTGGGATTCTGGAAACTTTCCCAAATGTGTTGTGTACTTGTACGTCTTGGGTTCGGGTCTGGTTCGGATTCAGAGAACCCATATATGGCTGTGCGTCGCACTCTCCTGAAACAGCGCCCTCCACGAGTGGCCAACGCGCGGCGCAACTGGAGACGCGCATGCAGTCTTTGCAAGAGCAGATTGATTGAGACTAGCGGTGAATGCGTAACGCGATCTGTTAATTTCTCCATTCTCCCTCCGTTAACAAGAGGCATGTGCTGCGCTGCAAGCCCCATCAAATGAAGTTTTCCCAAAGTTACCCATCCACGGGGTTGTGTGCGTTTTCTGTGTCGGTTCGGTGTCAGCGCCGTTTGATGCTTTGCGTGATCGACGATTTGTTCACCTCTTGCGCAGAATCAAATGAGTGCAATAGGCTTTAACTGGACTCTTTCCAAAGATACGCGATTTAAGAAATTGGAAATGTGTAGTGTGCTTGATGCCCACTGTTCTGTTGGATGTTGCATGGTGCACCGCCTCTTGTTACTGTATTTCTATGCATTTGTGCGCGTCCCAGCAGTGAATGCATCCTGCCCCGGGGAGCGGGGAGCAGGCAGCTGGATTGCAGTTACACTGGAAAACAGACGCACTTGTGTACGTTGCGCACAGTCCTTTGGTCGTTATATTCCACAGTGGTGGTTTGGTCCAATGTCTTCCAAAGAGCCACAGTTTAAACTTTATTAGACCCACAGCGGACTTTGGCAGGGAATGTTCTGGAATATGGAGGCTCTTTTTCTAACGTGTCAGATCTCTTGTCACCCGAAACAAGCGAGCTCTGTCGCTTTACTGTAATTTGTCTACCTTTCAATCCAAAAAATCATCACTGCTATAGGTTAGGACAGATGACATTATTTGCTTATGTAATGTGTACGGCTCCTTGCGTGGTCGGATATCTCCCTTGAGTATTAGAGCATGGCGCAACCAGGTGATCTCGTTGCAGTCAGTAATAAATAATCCTCATTATAAGGCACTAATTGCAAAATCTTATCAATTGCGCTAGAGCTGTGATATGATGGGGTCCAAAGAGAGTCTGAGGGTCACATGTAACTTCTCCTCCCTTAGGACAAAAAAGCGGACACACTCTCTCCACGTCGCTGTATGCGAGCAGCACCAGCTGGGCACATCTGTATCCCGTCTCACTAGCGCCATGGATGGATTCTATGACCAGCAAGTCCCTTTTATGGTTCCTACCAATAAGTCTCAGGTGGAGGAGTCTCGTGGCAGGCTGCTTAATGACCGAAAGAGAAAGTTCCTGGACACAGAACTAGCTCATGACTCGGAAGAGCTGTTCCAGGACCTCAGTCAGCTGCAGGAGATCTGGATTGCTGAAGctcagGTTCCTGATGACGAACAGTTTGTCCCAGATTTCCAGTCTGATAACCTGATGTTTCATGGCCCCCCACCATCTAAAATCAAGCGGGAGCTGCAGAGCCCCTCAGATGAGCTGTCTTCCTGCAGCCAGGACCAGAGCCTCACCACGCCCTACGGAGAGAAGTGCCTTTACAGCTACAGTGCCTATGACAGGAAGCCCCCTGTAGGGTTCAAGCCATTAACTCCGCCCTCGACACCGGTCTCGCCCTGTGGCTCCTCCCACACTCCAGGGACACACCCCCTCCACGAACAGTCCACTCCCGCAGTCCCCAGCCAGAGCCAGGCGGCGCGGTCCCTGCACGGACAGACCCCGTCCCCGGGCGCCACACACTCTCAGAGGTCACACCCACTCCACAGCCAGAGCCCGCCCTTCGCAGTGCCCCGCCCGCCCCTGACTCACTCCGAGGGAGCCTACAGCAGCGAGCACAGGTTTCACAGGCAGCTTTCTGAGCCCTGCCTGCCTTTCCCCCCATCAGAGGCCCAGGGCTGCCCCCCCTACCCACCCCAGGCTCCCGGCACCGCTAACAGAGATGGGCGACCCCCCTACCACCGCCAGATGTCCGAGCCGCTCGTCCCCGCGCCGCCTCAGGGCTTCAAACAAGAGCTGCCAGACCCCCGATATGCAGAGCAGGGTGTCCCCAACATGGGCCCCCCTCAGCCCTCCTTCCACCCCCTCTCCATAAAGCAAGAGCCCAGAGACTACTGCTTCGACTCCGAAGTGCCTAACTGTCAGTCCTCGTTCGGGAGGGGAGCCAGCTTCTACCAAAACGGCCATGACAACTTCACCTTTGATAGAGACCCTCACCTGTACTTTGACGACACGTGTGTGGTCCCAGAGAGACTCGAGGGTAAAGTGAAACAGGAGCCGACAGTGTACCGCGAGGGGCCTCCTTACCAGCGCCGTGGCTCCCTGCAGCTCTGGCAGTTCCTGGTCACCCTGCTGGATGACCCGGCCAACGGCCACTTCATTGCCTGGACTGGCCGCGGCATGGAGTTCAAGCTCATAGAGCCGGAGGAGGTGGCCGGAGAACGGTACGTCTACAAGTTCGTGTGCGACCCCGAGGCGCTCTTCTCCATGGCTTTCCCCGATAACCAGCGGCCCTGCTTGAAACCGGACCCGGACAGCCTACCTGGGGCCGAGGAGGACACCCTGCCGCTCACCCACTATGACGAGAACGCCCCCTACCTGCTGGACGGGGGCGAGCAATGCGTGGGAGGCCTGCCGTTCCACGACGGCTATGTATACTGACACGACCTGGCCCGAGCCCCGACCGCAGAGCAGGGCAGGGGGGTATGAACTCTGACCCCTTTGCCTGGACCTGTCTTGCTGCCTGCTTCCAGATTTGATTTTGCACGCGGAGCCCACGCCCTCACACTGCTCTGCGATTGGCTGGTGAGGAAGGGCGGAGAGAGTGTGGATGGACTCTGGACTTTACTGGCCCCACCTCCCCCAAAGCCTGGGGGAGGGGTTCTTGTTTGCCATGGAATCTGGGCGGGGCCAGGGGCGGGGCCACGCAGGACTGGAAAGGCCGACGGGACTTTCTGCACAGACTGAGAAATTGTAGCATTTCCATATCGACAATCTGCTTTTCTTAAGAAAACATTGCTCTTCAAAACCGCAGTTCTATTCTATGGctgcctttttatttgtgtCCCTCAGTTTTCATCACCTAAGAAAAGGGCTTtcaatttgcaaaaaaaaaaaatgtatcaatcttttttttttttttttctccagcaaACAAAACGAATTTGTTTTATCGTTGGTGAAGTGCTGAAACCCAAAGTGTTGGGCCTGGACTTTAGCAGCAAACAActgtttagtctttttttttttttaacctgttcACACCTGGAGTCTGTCAGTTCCTTGATTCCCAGGTAATTAACGGAAGATCACTTTCTCTTCCTGGATGTAGACCTTATCACCCTTCGTTGGGTCTCCTGACATCTCctcctccctcgctctctgCACGACGGAGGACTCGCTCACTCCAGGAAgccagttttctgttttgttttttccaagaaAAGTCACTTTTAAATCCTCTGCCAGACAGAGATTGTAATCAGTATGGcgttttcgttttgtttttcctcttgtaGAGTAGCTGGGGTAGCCAGCTTTAAACCGGCCAGTGTGCGTTCAGACATGGTCTTGTGCTGCCACCCAGAAGCACCttctaattaataattaatacgCACATGACCTCCGGGCAAAGGGCAGCAGCGCAGTCTGTCCCCTTCCAATGCACAGGACGCTCCTGTAACCAAGATACACTGCCAACGAGGAAACACGACTGGGCAGCTGGGGGCTACCTAAACACAGCAGCACGTCACGCGCAGCACTCCTCCTGCCACCGCCGGTTGCGAAGAAAGAAGCTGTCATGTGACTATAGCAGTGCTGGTAGAAGCAGggatagtttttatttaaacttttaattctTCTGTGTGACAAAATTCAAAAAGGGATGCAtatgacagtattttttttctgaagcttcgaatttataaatatatataaaaaaattaaaaaaaaattttttttttggggtaGGATACTTTTTGTATTTAGAGCTGAAAGTTTCTTTGGCGGTCCTGTGAGGATGTGGCATGCAGGCGGGAATGCCAGCTTTGCCAGACAGTGTTATCGGCAGGGCGGGGCAGGGGGCACAATGACCCTACTTTCGGGAGGTTTGCCATGTACAGCGGAAGCTCCGCCCCCTTCCCCTGCCTGCCAAACTCCATTTTTCGAGTGTCGAGTCCCAGGGTCCCGCCTCGTTCTGACAAGAGCCCGCCTCTCTGCACAGTGTATCCAACAGGCTACAGCCCACTAACATATCGCTTTCTATTGGACAAGAAGAAATCGCATAAAGTTCTctgcatttatattgtttcaTGAAGTTgttttgggaaagaaaaaaaaaaaagaaaaaaacatataaaaaatatatatatttttgcaaaggCTGCAtctgtttgtttcagatttattGTATAAGCTGTATAGTTCTGCCTTTTACAGATCTGTATATCTCTAATCTCGATCCCTGTGATGCAGTGATTCTGGTATGAGTTGCAAAGACTTCACCCTTCCTTGGTGGGGCAGCAGCGGGCGTCCACCTCTCAAGGACGAGGGTCATGTGAGCTTGTACAGGCTTCACCTCTCCCTTCACAATGTGTACCTCACACTGCTGAGTTAATAATCTGTACTGGGTACAATAAACAATCCTTTCTGCTTTA

Function

GO:

id name namespace
GO:0035108 limb morphogenesis biological_process
GO:0003677 DNA binding molecular_function

KEGG:

id description
K15593 ETV5; ets translocation variant 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158053 lncRNA upstream 407154 3081746 ~ 3083587 (+) True G126068
TU158038 lncRNA upstream 422278 3010243 ~ 3068463 (+) True G126054
TU158031 lncRNA upstream 605557 2870916 ~ 2885184 (+) True G126050
TU158024 lncRNA upstream 724202 2766255 ~ 2766539 (+) True G126044
TU158014 lncRNA upstream 932484 2557992 ~ 2558257 (+) True G126036
TU158251 lncRNA downstream 50601 3555566 ~ 3558424 (+) True G126215
TU158279 lncRNA downstream 147708 3652673 ~ 3656581 (+) True G126240
TU158294 lncRNA downstream 165837 3670802 ~ 3673176 (+) True G126248
TU158362 lncRNA downstream 220955 3725920 ~ 3730056 (+) True G126301
TU158436 lncRNA downstream 739767 4244732 ~ 4245036 (+) True G126368
AMCG00000789 mRNA upstream 8199 3437283 ~ 3482542 (+) True AMCG00000789
AMCG00000786 mRNA upstream 104842 3378438 ~ 3385899 (+) True AMCG00000786
AMCG00000787 mRNA upstream 117494 3314868 ~ 3373247 (+) True AMCG00000787
AMCG00000779 mRNA upstream 227500 3262181 ~ 3263241 (+) True AMCG00000779
AMCG00000782 mRNA upstream 232161 3251810 ~ 3258580 (+) True AMCG00000782
AMCG00000791 mRNA downstream 12757 3517722 ~ 3522353 (+) True AMCG00000791
AMCG00000793 mRNA downstream 28174 3533139 ~ 3547238 (+) True AMCG00000793
AMCG00000790 mRNA downstream 64448 3569413 ~ 3575908 (+) True AMCG00000790
AMCG00000798 mRNA downstream 78215 3583180 ~ 3592142 (+) True AMCG00000798
AMCG00000797 mRNA downstream 133205 3638170 ~ 3651877 (+) True AMCG00000797
TU157662 other upstream 1794494 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 1890102 1599696 ~ 1600639 (+) False AMCG00000723
TU157377 other upstream 3148970 339640 ~ 341771 (+) False G125561
TU159397 other downstream 5112234 8617199 ~ 8620195 (+) True G127134
TU159756 other downstream 6642892 10147857 ~ 10154187 (+) False AMCG00000949
TU160309 other downstream 8494699 11999664 ~ 12011425 (+) True AMCG00001002
TU161370 other downstream 11664946 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 11904147 15409112 ~ 15420880 (+) False G128823

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00073053 True 1598 mRNA 0.53 12 NC_007120.7 22634073 ~ 22647466 (+)
grasscarp (Ctenopharyngodon idella) CI01000009_09103888_09112675.mRNA True 1857 mRNA 0.52 13 CI01000009 9103790 ~ 9112675 (-)