RNA id: AMCG00000793


Basic Information

Item Value
RNA id AMCG00000793
length 2916
RNA type mRNA
GC content 0.51
exon number 12
gene id AMCG00000793
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 3533139 ~ 3547238 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAATCCATTGTGGATGAGGACTCCCCTCCATGGTCTGCCAGCTGGAGAGAACACCTTCACATTGGCTGCTGCATAGAAGACATCTACTGCCAGAGCCTCATCAAACCAGGAGCCTCAGTTATGATCTTGCATGCTGATGTGTTGGACAGAGGCGGGCAGAGATGGACACAAAGGCTGTTCCCTGTGGATGGTGAACAGCATACAGCAACAGGCAAACCAGCTCCAGTGATAGGGGCTGTGGCACTAAAGTCTCGAGGAGTTGCCTGGATTGTTGATGTGGAAGACGAACTGATCCTGGGCCTCGATTTTCTGCCTGCTACTCAATTCTGCCTGGACCTGGGCCAAGACAGACTGATAATAAGGGCCCCAAGGACAGCAGTTTCACATCAGGCAATGGCAGAGCTGTGTGAGCGGGGCAGCCGCTGCCTGAGTGAGGAACAAGCGGGAGCAGTGCGCCACCTAGTGGAGGaattttgtgatgtttttccaCAAAGTGTAGATGACAGTGGGCGCAAAGGCCCTCTTGAGGTTGCACACTGCTCTCCTGGAGTCTGTGTCGTGAAACCTGGGGCCGACAGCGTGAATGACATGTTTACAGGGGAGGCGGCCAGAATCTGTGATGATGGCCTCGCCTGGCTTCAGGCGTCCTTTGGCATTGACATACCGATCACACTGGTCCTGCAGCAGTTGACCGGCTGCTCTGAGGAGAGCTGCTGCCAGACCCCCAATATGCTTCAGATCCTCATTGGACGCGTTGACCACAACATCAACGGGACTGATGTCATCGTTAATACTATATCTGAGGACTTAGACCTCAGTAAAGGAGCCGTCTCCAACGCCATTTTACAGGCAGCAGGTTCATCGCTACAAACTCTGGTCCGGCAAGAGGCCGCAACGTCCCCCTTTGACCAAGGAGACGTGGTGATAACTAGAGGATGCGGTCTGAAGTGCAGCATGGTGTTTCATGCTATCTGCCCCTTTTGGGACCAAGGAAAAGGCAAATCAGAAGATttgTTGAAAGGCATCGTCAAGGAGTGCCTGAAACAAGCTGAGCAGCGGAAACAGAGCTCCGTGTCCTTCCCGGCCATCGGCACCGGAAACCTGGGATTCCCAAAGCCCCTGGTGGCCTCCTTAATGCTGGAGCAAGTCCTGAGGTTCAGCCAAAAGTGGGACCCCAAACGTCTGCAGGAAGTGGTTTTTATAGTACATCCCAGTGATGTGCAGTCTGTGAGGGTAAGAAGTGATCCTTTGAACAATCCTAGgatttCACTTCAGAGTTCAGAAAGCAGCCCCACGGACGCCAGACACCAGTCAAGCACCATGCTGGCCCCACACAACCGGGAACTGATCTTGACACCTACTCTGGGTGTGTACTGCATGACGATTGGAGGGTTGACCCTTGAGGTGTTAACAGGAGACATCACCAAGGAGACTACTGATGTGATCGTCAATTCATCCAACAACACGTTCACTCTTAAATCAGGACAGGGGGGTACAAGTCCCTCTCGCGTGGCAGATGCGATGATAAGCGCAGTGGTGGATTTCGTGAGTAAGAGGAAGGCGGGGGAGTGTCTGCGGAGCGTGAGGATAGTGATCTTCCAGGCCGTCATGTTATCTGAGTTCCATAAGAGCCTGCAAGCCAGAGAAGGCACTGCCCTGCCAGAGCAGAAGTCTGTGTTCTCGAGAGTCAAGAGTGCTTTATATTCCCTTGTAGGGAGCAgttcagaaacaaaagaaaatgaagaatttGTCATGATGGGTGAAGAGTTCGAGCCGGCCGTGTTTCAGATCTGTGCTGAAAGGAGCCAGGACATGGCCAGGGCCAAAGACTGGATCAAAGAGCTTATTATCAAAGAACAGACTGAAGAAACCATCAATGACAAGTGGATCGCTCTTCTCTCTCGGGAAGATTTGCACAAGATTCAGGACCTTCAGAAGACGCTGCAGGTCAGCATTAAGGTGGAGAGCCGGGGCCCAGAGTCCTCTATTCAGCTGGCAGGGCTGACGCGAGACGTGCTGAAGGCCATGACTGAGATCCAGGTGATGATCAGGAAGGTTGAGAATAAAGAGACCCAGAAACGCGAGGCGGCCGTGGTTAGCACCTTGGTGGAATGGCAGTACGAGGACAGCGGCAGCTTTGTGCCTTTCAACAGCCTCGCAAACCTCACTCTGGAACAggcttttgaaaacaaagaagCTCGGGTCAAAATCAAGATTGATAGAAAGAATTATACAGTTTCGTTGAGCAGGAGTGTGGCAGTAGATGACTTCAAcaaaaagataaagataaaaagAGTCGTATTGACAGATGAATCTCTCGGAAACCTTCCAACCCACTGGAGTGATATGAAAGGGTCACAGACAGTACAGGTGCAGATCCAGACAGGCACTCCTGAGTATCAGGATGTGGAGCAGGAATTCAGGAAGACTTGTCCAAACAACATACTGAAGATTGAAAGAATCCAGAACGGCTCATTGTGGCACAGTTACCAGATCAGAAAGAAGCACCTGGACGAAAAGAACGGCCACACTAACAACGAGAGACGGCTCTTCCATGGCACCTGCCCAACGACACTGAGTCAGATCAACACGCACGGCTTCAACCGCAGCTACGCAGGAAGAAATGCTGCTGTCATCGGGAATGGAACCTACTTTGCAGTTGATGCGAATTACTCTGCAAGCAACACTTACTCCAAGCCCGATGCCCAAGGACTGAAATACGTGTACTACTCCAGGGTCCTCGTCGGAGAGTTTACCACCGGAAGAGCTGGCCTGATCGTGCCCCCTGCCAAGACGTCTGCGGATCCTGCAGATTTATATGACAGTGTTGTAGACAATCCGGCAAATCCGAgggtgtttgttattttcaatgacGTGCAGGCTTACCCAGAGTACCTGATCACCTTCCGCTGA

Function

GO: NA

KEGG:

id description
ko04622 RIG-I-like receptor signaling pathway
ko05164 Influenza A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158053 lncRNA upstream 449552 3081746 ~ 3083587 (+) True G126068
TU158038 lncRNA upstream 464676 3010243 ~ 3068463 (+) True G126054
TU158031 lncRNA upstream 647955 2870916 ~ 2885184 (+) True G126050
TU158024 lncRNA upstream 766600 2766255 ~ 2766539 (+) True G126044
TU158014 lncRNA upstream 974882 2557992 ~ 2558257 (+) True G126036
TU158251 lncRNA downstream 8328 3555566 ~ 3558424 (+) True G126215
TU158279 lncRNA downstream 105435 3652673 ~ 3656581 (+) True G126240
TU158294 lncRNA downstream 123564 3670802 ~ 3673176 (+) True G126248
TU158362 lncRNA downstream 178682 3725920 ~ 3730056 (+) True G126301
TU158436 lncRNA downstream 697494 4244732 ~ 4245036 (+) True G126368
AMCG00000791 mRNA upstream 10786 3517722 ~ 3522353 (+) True AMCG00000791
AMCG00000792 mRNA upstream 28174 3490741 ~ 3504965 (+) True AMCG00000792
AMCG00000789 mRNA upstream 50597 3437283 ~ 3482542 (+) True AMCG00000789
AMCG00000786 mRNA upstream 147240 3378438 ~ 3385899 (+) True AMCG00000786
AMCG00000787 mRNA upstream 159892 3314868 ~ 3373247 (+) True AMCG00000787
AMCG00000790 mRNA downstream 22175 3569413 ~ 3575908 (+) True AMCG00000790
AMCG00000798 mRNA downstream 35942 3583180 ~ 3592142 (+) True AMCG00000798
AMCG00000797 mRNA downstream 90932 3638170 ~ 3651877 (+) True AMCG00000797
AMCG00000799 mRNA downstream 109629 3656867 ~ 3660538 (+) True AMCG00000799
AMCG00000806 mRNA downstream 139021 3686259 ~ 3698536 (+) True AMCG00000806
TU157662 other upstream 1836892 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 1932500 1599696 ~ 1600639 (+) False AMCG00000723
TU157377 other upstream 3191368 339640 ~ 341771 (+) False G125561
TU159397 other downstream 5069961 8617199 ~ 8620195 (+) True G127134
TU159756 other downstream 6600619 10147857 ~ 10154187 (+) False AMCG00000949
TU160309 other downstream 8452426 11999664 ~ 12011425 (+) True AMCG00001002
TU161370 other downstream 11622673 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 11861874 15409112 ~ 15420880 (+) False G128823

Expression Profile