RNA id: AMCG00000797


Basic Information

Item Value
RNA id AMCG00000797
length 4664
RNA type mRNA
GC content 0.43
exon number 11
gene id AMCG00000797
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 3638170 ~ 3651877 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tataatttgaggaCACAACCTGTCCCggtatgtttttgtgtaaagCAGGATGAATGAAGATGTGTCCAGGAGACAAGCGCCTATTGCCGTGACTGACAGGACTTTGGCCGCAAAAATGAATTTCCACTGAAACTCAGTGTCTTTTACAAGCAGGTTAAACTGAGATTGTCAACTCCAGAGATACAGCCTCTTCAGTCAATGCGAGACGGGAGATGCTGCTGCTTGGATCTGCTAACTGGGATTATTTGATCTGATTTTATCTTGCttattaaaaatcaatgtattgatCAGATATAACATCAGGCTGCTGTCAGACACTGGGATTActtgtatagtattttaaacaacgttgtaataaacaatacactatAATATctgcatgtatttgtttcaaaacCAATCAGTGATAAGGATTTGTGTCTGTTCTCCACAAATGGGACTATTGTAATCTAAAATCACTGTGAAAATGCAGACATTGGTCTTGTTTGTATTACTGGAAGTTTGCTTACAGAGGGATGAGGTGCAATGCCATAAGCTTCTCCAGCTGCAGAAGAGGAATTCCTCTGAAGTGGGACTACACCAGGCAGAGTGTGAGGGGACGTGGGACGGTCTGAACTGCTGGCCGGCCTCTGCTGTTGGGAAGACTGTGGCCATTCCTTGTCCCCATTTCCTCGTTGTGATTACAGGGAAAGAAGGAGTGGTGTACAGGAACTGCACCAGAGATGGCTGGTCGCAGGCCTTCCCCCAGCACGAGATTGCCTGTGGATATGATTTAATACAGGAAGATCTTCATAATCATAACAACATTTCTGAAAATCCAAAGTACTTCCTGCATGTGAGAATCATGTACTCTGTGGGCTACGGCATATCTCTCGTGTCCCTGATCATAGCAATTGGCATTCTCAGTGTCTTCAGGAAGCTGCACTGCACGCGGAATTACATCCACATCCAGCTCTTCGTGTCCTTTGTTCTTCGAGCGCTGTCCATCTTTGTGAAAGACTTCGCTCTCTTCTCTGCCGAGGACATGTATAAGTGCCACGTCTACCCGGTGTGGTGTAAGATCGTGGTGGTGTTCTTTCATTACTGCATCATGGCCAATTACAGCTGGTTGATGGTTGAAGCTCTCCACCTCCACACCCTGCTggttttctccttcttctcggAGAGGAAATATTTCTGGGTGTATATCGTTTTTGGCTGGGGCTCaccaatgttatttattatagccTGGTCAATAGCAAAGAAATTACTTGAAGACATAGGgAGGCTTGCCAAATCCACCCTTCTGTTGATCCCTCTGTTTGGCGTCTACTACATCCTGTTTACGTTCTTTAATCACGATGTCAGGTCTTTACCTTGGTTATTCTTTGAACTCGCCCTGGCATCAATTCAGGTCCAGAGTGAGGTCCAGAGGAAGTGGAAGCGGTGGAGGCTGAAGCAGCGTCTCCATGGCCAAGCCCGGCCCCACCAGAACTCCATCAGCCACAGCGGGGGGGCGGTGACCCAGGAGTCCCTGCTGACACGGGACCAGAGGAGCCCCGGCCAATGGGAGTCCAGCCTGGTGTGACGACGCCGACCGCCGGCAGCTCTGGCACCTACAGACCGGGCAGGAGACCGTTGGAGAGGACTGTCCTGTTGATGGCATCACGGCAGTTGTGCAGCATCATGGCTGTCCCTTTCCTGCACTGGATGGATGTTAATCTAAGCaacaaaactatatttatcCAGATGCTAAACTGTGTATAAAGCTCTTTTTAATAAAGGGCAGCAGCAATGATGTTGGGGGGAAAAATGAATGGAGAAACTACTGCATGACATCATTGTGCATCCTCAACATGTTGTGAAGAACAGAAAATATGACGGCAGTGTGGCACAGCACAGGGCTTCATACCAAACCATTCCCACTGGATCGACGGGTAAATTTGAACATGGAATGATAAGAATTCCCAGAAGAAGATTCTCATAAactgtatttctatttttctttacttcatGAAAGTCCTTCAGGCTCTGGACACTGAACCAGTAGAAAGGGAGAAACTGTGAGCATCATTAGCagtcatgctttaaaaaaacaactggcGTCAACACTTTTTGATCTATTACCCGAGCACCTTGAGCTCTGTTTTGTATTCTTCAGAAGTACTGCAGGATTGTAGCTGGGCTGTGCAACTGGGATCACTTTGTCAAGAACCGGACTGCGGCTCTCGTTCCTCGTAACCAGATATCCAAGGAAGAAGTTAAATAAGTCCCAAGAGCTCATATAGAAAGaccgaaaaagaaaaaagaaaagcttatatattgcatatttgtttatttgttagaTTATTTTCCTTGTGAAATATGATCTATGATACTCATTGAGAGATATAAACCCAGGGTATTGATGTGTATCCTTAGCGTTTCAGGCTGCAAGGTTTCTACAGCAGAAGATTATATTCATATGTTTCTTTAGTATAAGTATATTTTAgttatgtttataaatatatatatatatatatatatatattatgtataaataatatatttattctttattttaaatggcaaataaaTCATGTCTCTCTTTAGACCTCAGAAGTGGTATTACTAGAATTAAGTTCTATAATTGTACAATATAGCAAATATTTGTAAGAGTTCGACaaattgctgttgttttttttattcaatgacgaatgtgaaattgtatttgttttattattttttaatcatgtttaaCATCACCCACTAAACCATGCCAGAGGtttctgtttattatataagatgatataaagtataatatttcTAATGAACTGATTTTACAGCTCTGgccatttttaatgttatttctcaGTCCAGACGTTAATAAATGCAGTCTTActctttaaatattattgtattattggaCTGCCTGtttcataaacatttatttacactgtttcACAGTAACTGTGGTACCTACATGTCCAAATCATTCCTGCttctaaattattttcaagGCAGTAGAAAGCACAAAGTGAAAATCAGGCAATTATGATATCTCTTGTTCTGTATTTCATATATTACAAATTTATCTCCAGATTGCATGCCAGCAGTAGTCATGCTTTCTGAAGTGACGTGGCCAAACCAAAAGGCCTACCTAGTGATTTATGCATCACTTACATAAttacaagagaaaacaaacctgAGCAGTGCACACTTCTGGGAAACAAATTTGACCCTGCTTTAGTTATAGTAACTAAATTCCTACTTTTTTGTGGCAATTTGTATTGATTCACTTTTATTAGGCTTCAattcatacttaaaaaaaaatctgtattggtCACATACATAATCTAGAATGAACGCGGATTAAAATGTCTCAATTTATTTGTCCATTTCCTACTGTGCTCTTTTACTCCAGATACCATTGTGATGGGTGCaacaacagaacagaaataaataatggcaCACGTTTAATACAAAAGATGACTTGGGTTACAGATGTGTTGTCATATGCAGTCGCAAtcagaaatgttaaaaaaaaaattgaaaatatctatttaaaagtaattcatATTCCTATAAATGAGCCTCCATATCTCCTACATTTCCAAAAAGCAATACAGTATGTAAAGTCCTGCATTAATTAACAGGCAGTCTCTTAATTGTGGAGATCATCAGATTGTGAATGCCAGTTTGTGGAGAAAGCTTCTGAAGAATAATATGCCAACTTGAACAGATCCCAGATGTCACAGAAAAGGTGAAActgttcaattcaattcagtggTTTCCTGAAGTTTATGAAGGTACCCATTACATGCACAAGCAGGTTTGTAGATCTATCGGCCATGTCTCTCTCACAACGAGAGAGAGATCTGTATTGCACAATCCACAGACACGTGACATAAGTCATTGCATGTTTTGTAAAGGTGTAGTCTCGTGGACGTACACAGTACATATATGTGTGCTGCGTGTCCAGAGCGAGGGGAGGATTGCACTAGTATTTTCCTCGCTCTCCCGTGGGCAGCAGGACCATGTTGTGGATGTGATGCCCACTCATCCCGTtgatgaagaggaggaagacTGCGGTGAACTGACACCAGAAGGTCAGGGTGAAGCCCAGGAGGCTGGCCTGGCTCCTCAGCAGCAGGACGAAGCCCAGCAGCCCGGCGGCCGCCAGCACGGCGGAGAGGAGGACCAGCACGGACCCGAAGGCCCACCTTCTCCTGGCGTCCTGGCCCTCGCACACCTGCGACATGACCAGCAGCTCCAGGCCGAAGATGGCCGCCACCACCGCGAATGACACCACGGTCCTGCAGAAGACGAGCCGCACCGGGAGGCCCTCGATGGCCGCCTGTGTGAGGTCAGTGGTGCAGTTGGGCTGGGCGCCGTCCTCTGTGGTGCAGAAGTACCAGAGTCCAAACATCTTCCCGTCGGAGAGCAGCCAGTGCCCGTCGCACACCGCGATGGAGGACAACACGATGGCCATTGTGATGCACAGGACGATCAGGCCGCGTGTCACAGTCTCCAGAAATTGCATTTGTGGTTTCGGGCCGGGATGCACGCCTGGATTCTGGaTTTTTATAGCTGTCATAGTGGTGGTCTTTGCCTGCTGAGCAGTCTTCGAATTGAGGAAAACCAGCAGGAGAAACGTGCAAATGAGGAGAGCAGACTCGAGTCAAAGGTTCAGTGATAGAGAGCTG

Function

GO: NA

KEGG:

id description
K04588 SCTR; secretin receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158251 lncRNA upstream 79746 3555566 ~ 3558424 (+) True G126215
TU158053 lncRNA upstream 554583 3081746 ~ 3083587 (+) True G126068
TU158038 lncRNA upstream 569707 3010243 ~ 3068463 (+) True G126054
TU158031 lncRNA upstream 752986 2870916 ~ 2885184 (+) True G126050
TU158024 lncRNA upstream 871631 2766255 ~ 2766539 (+) True G126044
TU158279 lncRNA downstream 796 3652673 ~ 3656581 (+) True G126240
TU158294 lncRNA downstream 18925 3670802 ~ 3673176 (+) True G126248
TU158362 lncRNA downstream 74043 3725920 ~ 3730056 (+) True G126301
TU158436 lncRNA downstream 592855 4244732 ~ 4245036 (+) True G126368
TU158587 lncRNA downstream 1224990 4876867 ~ 4880503 (+) True G126500
AMCG00000798 mRNA upstream 46028 3583180 ~ 3592142 (+) True AMCG00000798
AMCG00000790 mRNA upstream 62262 3569413 ~ 3575908 (+) True AMCG00000790
AMCG00000793 mRNA upstream 90932 3533139 ~ 3547238 (+) True AMCG00000793
AMCG00000791 mRNA upstream 115817 3517722 ~ 3522353 (+) True AMCG00000791
AMCG00000792 mRNA upstream 133205 3490741 ~ 3504965 (+) True AMCG00000792
AMCG00000799 mRNA downstream 4990 3656867 ~ 3660538 (+) True AMCG00000799
AMCG00000806 mRNA downstream 34382 3686259 ~ 3698536 (+) True AMCG00000806
AMCG00000805 mRNA downstream 110942 3762819 ~ 3763343 (+) True AMCG00000805
AMCG00000808 mRNA downstream 256777 3908654 ~ 3928160 (+) True AMCG00000808
AMCG00000812 mRNA downstream 350249 4002126 ~ 4047678 (+) True AMCG00000812
TU157662 other upstream 1941923 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 2037531 1599696 ~ 1600639 (+) False AMCG00000723
TU157377 other upstream 3296399 339640 ~ 341771 (+) False G125561
TU159397 other downstream 4965322 8617199 ~ 8620195 (+) True G127134
TU159756 other downstream 6495980 10147857 ~ 10154187 (+) False AMCG00000949
TU160309 other downstream 8347787 11999664 ~ 12011425 (+) True AMCG00001002
TU161370 other downstream 11518034 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 11757235 15409112 ~ 15420880 (+) False G128823

Expression Profile