RNA id: AMCG00000798


Basic Information

Item Value
RNA id AMCG00000798
length 1944
RNA type mRNA
GC content 0.52
exon number 17
gene id AMCG00000798
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 3583180 ~ 3592142 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAAATGCACAGAAGCATGCTTTCGCCTTCCTGCCGGAGGTGGTTCAAACTGTCAGCTCGCTGGGCGGCGGGGCGCTCGGCACTGCGGGAGCAGAGGGAGACACAGCGGGCAAAACGTCCGCTCAGTTGTGCATGTGATGAACACTGTGCTGCACTGGAGATTGCGTATTCTCTAAATACTCCTGCGTAAGATAGtGCCTTGCGAATAGTGCATACGTCATACAGAATGTCATATCTAAGTTCtgGCCTAGAGAGAGGGAACGAACAGCAGGAACAGGCGGACTGGGAGGCAGTAAACCGCTTACTCCGACACCATGGCTTCAAACCAATTCATTTTGCAGACCCCATGGAAAACAGGAATCTAGCAGATCTAGTTCTTTTGGAGAAGAAGTCTGCCTCGGAAATTCAGCTGGTACTGCAGAGCGTGTTAAAGGACACCGAGAGGAGGCAGGTGTTGATACAGGAGCTGATCCAGTCTAACAATCAGTTAAAGGACGaggcacagcagcagcaggcccGAGCCGCGCGGCAGTCCCAGCGGGCCGCGGAGCTGGATGCCATCTTGTCGGGAGTCAAGGCCAAGGTTCAGCAGCTGGAGGACGACTACATCGCCAAGGCCGCGCAGCAGCAGACTCGCATgaagcagctgcagcaggaaaAGAGAGACGCCCAGAAACGCTACCAGTTACTGGAGCAGAAGCTTGGCGAAGAGCGAGAGGTCATTTCGCAGCTGCAGAAGAAGCTTTACTTCACCgtgaaagaggaggaggagagagtgcGGCGACAGAACAACGTCTTCCTACAGATTCGCAAGCGGGCGGCCAAGCCACACTCGCCGCTCGACCAACAGATCCTGGATGTCATCGATGTCTACGAAGCTCAGATTCACGACCTGCGCTCGGAGATCAGGACACACAGCGCCGAACCTGTAGAGGGAAACCCCGAGCATCTGCAGTGTGGCAGAGAAACCGAGAGGAAGCATGCACTAGATGCAACTCCGCATTACAAAGCTCTCCTTGAGTCCTATCAGAGCCAGCTGAAGGAAACCAAAGCCCAGAAGGAAGAACTGAGACGCAGCATCCAGAGCTTGAGACAGGAGTTGGAGTCCAGGCCAACTGCAAAGGAGTTCAAGTCATACCAACAGCAGCTGAAACGGATGGACAGAATTAGCCGGCAGAATAATGTCAAgtctGTGGTAGAGGATGGTGCAGATGCAGGACACGGCACTGGCGTGGAGGATATAGGCGGCATGCAGGACAGCCTCTGCCGGAGCTACCTGAAGAACGTGTGTAAAGAATTGGAAGTGCAGAATTTGAACGATCTTGTTACAGTTGCAAAACTTAGGACGCAGCAAGCAGACTCGGTTCCCAGACTCACTAAGATCCTTAATGCAATAAAGAGCATTTTAAACAACCCGAGGGCTCCACTACTGCTGTACAAGCAGAAGCCATACCCAGAGAGCAAGGGCAAGGAGGAATACGAACATCTTCTACCAACGATAGACTTGTGGGCCGAACAGCTCATCTCTCTGAAGGAAGTCCGCAGTCCCACGCGCAGCACCCTGCAGGCCATGGTGTCCCACTTCCAGAAGCTGTTTGACGTGAACTCCATCAGCGGAGTGTACCCCCGCATGAACGAGGTGTACACCAAACTGGGGGAGATGACCAACGCCATGAGGAACCTGCGAGACATCCTCGTGCTGGATGATGGCGCTCCACCCAGCGCTGTGGTGAACAAGGTGGGGAAGCTGTGCTGCTCAATGTCAATCATCTGGAAGAAATTGTACCTGCAGTGCGATCGCTCAGTGACCGATGAATAGCCtttgtttgattgttgtgcagtttgttttttacatttcaattttgttaaaGTTTTTTAAGTAACTTCTTTAGCTGCCTTAACTTTGAGTCTcaatgtaaattgaaataaagGGTTTATTTCTTCA

Function

GO: NA

KEGG:

id description
K16802 CEP70; centrosomal protein CEP70

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158251 lncRNA upstream 24756 3555566 ~ 3558424 (+) True G126215
TU158053 lncRNA upstream 499593 3081746 ~ 3083587 (+) True G126068
TU158038 lncRNA upstream 514717 3010243 ~ 3068463 (+) True G126054
TU158031 lncRNA upstream 697996 2870916 ~ 2885184 (+) True G126050
TU158024 lncRNA upstream 816641 2766255 ~ 2766539 (+) True G126044
TU158279 lncRNA downstream 60531 3652673 ~ 3656581 (+) True G126240
TU158294 lncRNA downstream 78660 3670802 ~ 3673176 (+) True G126248
TU158362 lncRNA downstream 133778 3725920 ~ 3730056 (+) True G126301
TU158436 lncRNA downstream 652590 4244732 ~ 4245036 (+) True G126368
TU158587 lncRNA downstream 1284725 4876867 ~ 4880503 (+) True G126500
AMCG00000790 mRNA upstream 7272 3569413 ~ 3575908 (+) True AMCG00000790
AMCG00000793 mRNA upstream 35942 3533139 ~ 3547238 (+) True AMCG00000793
AMCG00000791 mRNA upstream 60827 3517722 ~ 3522353 (+) True AMCG00000791
AMCG00000792 mRNA upstream 78215 3490741 ~ 3504965 (+) True AMCG00000792
AMCG00000789 mRNA upstream 100638 3437283 ~ 3482542 (+) True AMCG00000789
AMCG00000797 mRNA downstream 46028 3638170 ~ 3651877 (+) True AMCG00000797
AMCG00000799 mRNA downstream 64725 3656867 ~ 3660538 (+) True AMCG00000799
AMCG00000806 mRNA downstream 94117 3686259 ~ 3698536 (+) True AMCG00000806
AMCG00000805 mRNA downstream 170677 3762819 ~ 3763343 (+) True AMCG00000805
AMCG00000808 mRNA downstream 316512 3908654 ~ 3928160 (+) True AMCG00000808
TU157662 other upstream 1886933 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 1982541 1599696 ~ 1600639 (+) False AMCG00000723
TU157377 other upstream 3241409 339640 ~ 341771 (+) False G125561
TU159397 other downstream 5025057 8617199 ~ 8620195 (+) True G127134
TU159756 other downstream 6555715 10147857 ~ 10154187 (+) False AMCG00000949
TU160309 other downstream 8407522 11999664 ~ 12011425 (+) True AMCG00001002
TU161370 other downstream 11577769 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 11816970 15409112 ~ 15420880 (+) False G128823

Expression Profile