RNA id: AMCG00000800


Basic Information

Item Value
RNA id AMCG00000800
length 3017
RNA type mRNA
GC content 0.55
exon number 23
gene id AMCG00000800
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 3613564 ~ 3637244 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGCGCAGTTGGCACCCCGCCGCCCCCCGGTCCGCTTGCTGCGCCGGCCGGTGACACCCCGGAAGTAGATGACCGTTGCCACAGCGACGCGGATGTTTGGCGGAAGTTTCGGATTCGTTGTCGCGTGCGGGAGGAAGAGAAGCTGAGCAGGTACAAGAACGCCATCGTTATGGAGGTGGTCCATTCAGCATCCGAGCTGTTTACAAAGagctttaagaaaaaaactccTCTTCCTTTGAACCAGCTTGTGGAAGAAACCAAAAAGGGAGCAGATGTACCCAACCACCTTCTGGAAACAAAGATTTATGCCAAACTCCAGAGTAACAGTGTCATACAGGCTGAACCCGCTGTACTGCATTTCAGCGGCTTTGAACTGGGGAAAAGTTATCTGCAGGTCTTGCATCGTCTGGTGCCAGGGCTCTCGTACAACGTCACTGTGCTGTTCCGCCCAGATGAATGGCGTTATTTTTACGATTGTATTCGAGTTCACTGCAAGGGAGACGATAACCTCCTGGTTCCAGTTCACGCCTATCCTGTCATCGATGATTTGCACTTCCCTTCGCACATCAACCTGCGCAGCGTTGCCCTCGGGCAGAGCAAGACACACGTGATCCCGCTGAGCTGCAGCTGCCCGATAGACTTTGAGTTCCAGATCTACTGCCTCCAGCCCCACAAGGCCTTCTCTGTAGAGCCCCTTTCAGGGATCATTCCTGCGAACGGGCAGGTGGACGTTACCGTGACATTCTCCCCCTCTGAATATGGCACCGTGCAGACGACATTACAGCTGGTCATTTCGCAGTTCAACTCCAATTCTTATGTCTGTACCTTCACTGGGACCTCGTCTCCCAACCTGGGCCTGAGGCAACAGGACAAACATGAGGAAACACAAGTCTCCTTTGCCAAAGACCTGCTGGACCCTCAGCGGTTATCAATGGTGCATTTATCCAGGACAAAGCGAAAATCGAAGCCAACGCATTCCCCAGATAAACCCAAGGAGATCATCTACCAGAACATGAGGATTCCCGTGGCTTTATTGAACCCAGGCGCAGTGGCCAAGGTACTCCTTCAGGAGCCGGGGAAGCTGCGCGCAAAAGACTTGAAGGAAGCCCTGTCCCAAACCGGCGCTGGATTTCAGACCAGACAGATGAAAGAAGCCACATTTGACCAAAGAGTTCGTCAGGATGTGCTGGAAGAGAGAGCCAATCAGCTCAGATGGCAAGTGCACCTTGGCAGGGATCCAGTTTCGACCGCAACGAGACAATGCATTTTGGAGGAAAGGGACATTGCAGCACATGAGTATAtgTTGCAAAGAGGAGACGTCACAACAGAGCAAGAAATGCAAAGGACGCAGCCTCAGGTGTCTCAGAAGAGAGTCCTCCGCGATGCAGGACAGCTTCCTGTCTGCATTCCAGCGTTTGACGTCTATTCAAACAACCCCTGGGAAGCCAGACACAAAGCTCTCTGCCTTTTCCAGCAGACAGCCAGGAAGatcCTGATTCGCTGCCGCATGAATAACAGGCTGCTCTCTCTGAGAAAGCTGGTCCAGACGCTCTCCGACAGAACGGCTCAGGCAGGGGACTCAACATGCCGCACTAGTAACCAGGGAGAGAAGGCGTTCCCTCTGAAACTGTCCCTGGACAATTTGCTTCCCTTCACATTCCCCActtacaccccccccacccaggcCGACGAACTTGCTCCCGATGCCCTTGGACAGGTTCCTGTTAAACCCACTGAAATTGATATTAAAGCAGAGACTCCTTTTTTCAAGCTAAAGGTTCCCCAGCGCTACAGACTGATGGGATACCAGCCCGTGTCGGCGATGGCTGCATCGGCTAGCTTCGTCCCCCAGGCGCTGGCGAGACCGCTGAGGTCAGGAGCCGAGGACGAGCTGGGGCCAGCTGTGGTCCGCCCCCCCTCAGGGACGACACTGATTGACCTGGAAGATCCGCGAGACGAGGCGTCAGGACAGAGAGAGCTGGCCTTCACCGCGCCCCGCGCTCTGCTGAGGGCGCCAGAGTGCCACCCACTCAGGATCTTTAACCCCACTCCTGGGCTTCACACATTTCAGCCCCACCTCCCCTACCTGGAGACCGACCTCGAGTTTAATCTCTGCCCTGTCCCGAGGTACGCCATCACCAGGGCAGCCGTGGAGGGGGTTCGCGTCGCTGGCACACAGAAGAAATTCCTGGACCGAACGGAGGTGATTCCTGGGGTGATGACCTGGAGGAAGTTCCCATCGGCTTCTCTGGCCGCTCTCTCCACCGCCCCTCCGCTCACCGACGCCTGGACACCCAGAGGGTCGGACCTGTTCGGCTCGGACCTGCTGCCCGTCGAGGTCCCTCCTGTCCTGACCGGTCTGCCGGAGGAGCTGAGAGACGACGTCATGGACGGATCGTCTGAAACCGCGCCGGCGTCTCTCACTCCTGAGATGATCAAAGCCGAGTTTATGTTGACTGAGGGTCACACTCTGACACAAGAGAAAGACCATTCGACCCGGGAGGAAGGGGACGCGAGAGAGCCGCAGCCGCAGCAGCCCCCCCCAGCGCCGCGCAGCAGTGGACTGGGGGTCAGGGTCGCGGCCCGGCTCGGGCAGGTGCAGGCGCTGGCCAAGGAGGGTGGCAGAGACTCGGTACCCAGCTGAGGGGTTCTCGTTTGCGAAACAGTATACAGATGTTTTCTTCCGACGAATTAAGCTTTCTGAATgttgtaaaaaaagaaatgaaatgaagaCCATTGATCCTTCAGAATGTAATAGttgtgtaatgtatgtattccCCTATAAACTATTAatactgttatatattttaaatactgcataTGTATATAATAGTGTTatgattgtaaattattattatttgcggAGTTCAATGCTGAAGTTTctacaaatgattaaaaaatgactttCCTGTATTGGGGCGCCATCCAGTGGCTGCGATGCCAGTTTGTTGTGGATTGAGTCGGGCGCAGTGTAGCAGCTGTGGGGCGCGGCTGCAGTTCACTGGAGCTCCTCGAGG

Function

GO:

id name namespace
GO:0005215 transporter activity molecular_function

KEGG:

id description
ko04976 Bile secretion
ko04975 Fat digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158325 lncRNA downstream 60587 3550840 ~ 3552977 (-) True G126275
TU158101 lncRNA downstream 477651 3133876 ~ 3135913 (-) False AMCG00000777
TU158015 lncRNA downstream 1055315 2557991 ~ 2558249 (-) True G126037
TU157974 lncRNA downstream 1093344 2427941 ~ 2520220 (-) True G126005
TU158357 lncRNA upstream 37037 3674281 ~ 3676927 (-) True G126296
TU158437 lncRNA upstream 607485 4244729 ~ 4245041 (-) True G126369
TU158504 lncRNA upstream 1000123 4637367 ~ 4637640 (-) True G126428
TU158505 lncRNA upstream 1000714 4637958 ~ 4638285 (-) True G126429
TU158506 lncRNA upstream 1003814 4641058 ~ 4641341 (-) True G126430
AMCG00000803 mRNA downstream 2174 3594282 ~ 3611390 (-) True AMCG00000803
AMCG00000796 mRNA downstream 31379 3576437 ~ 3582185 (-) True AMCG00000796
AMCG00000795 mRNA downstream 44915 3545289 ~ 3568649 (-) True AMCG00000795
AMCG00000794 mRNA downstream 96354 3511119 ~ 3517210 (-) True AMCG00000794
AMCG00000788 mRNA downstream 299439 3276258 ~ 3314125 (-) True AMCG00000788
AMCG00000801 mRNA upstream 13072 3650316 ~ 3650858 (-) True AMCG00000801
AMCG00000804 mRNA upstream 15442 3652686 ~ 3656552 (-) False AMCG00000804
AMCG00000802 mRNA upstream 25003 3662247 ~ 3667451 (-) True AMCG00000802
AMCG00000807 mRNA upstream 83169 3720413 ~ 3745555 (-) True AMCG00000807
AMCG00000811 mRNA upstream 253779 3891023 ~ 3894951 (-) True AMCG00000811
TU158094 other downstream 464312 3131714 ~ 3149252 (-) True G126096
TU158093 other downstream 479747 3131714 ~ 3133817 (-) False G126096
TU158081 other downstream 563613 3044257 ~ 3049951 (-) True AMCG00000771
TU158078 other downstream 571600 3036931 ~ 3041964 (-) True G126089
TU157994 other downstream 1155681 2451868 ~ 2457883 (-) False G126017
TU158313 other upstream 15413 3652657 ~ 3656561 (-) False AMCG00000804
TU158503 other upstream 998852 4636096 ~ 4636516 (-) True G126427
TU158856 other upstream 1935461 5572705 ~ 5573027 (-) True G126700
TU159187 other upstream 3074714 6711958 ~ 6733817 (-) False AMCG00000888
TU159288 other upstream 3992671 7629915 ~ 7645722 (-) True G127039

Expression Profile