RNA id: AMCG00000801


Basic Information

Item Value
RNA id AMCG00000801
length 543
RNA type mRNA
GC content 0.63
exon number 1
gene id AMCG00000801
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 3650316 ~ 3650858 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAATTTCTGGAGACTGTGACACGCGGCCTGATCGTCCTGTGCATCACAATGGCCATCGTGTTGTCCTCCATCGCGGTGTGCGACGGGCACTGGCTGCTCTCCGACGGGAAGATGTTTGGACTCTGGTACTTCTGCACCACAGAGGACGGCGCCCAGCCCAACTGCACCACTGACCTCACACAGGCGGCCATCGAGGGCCTCCCGGTGCGGCTCGTCTTCTGCAGGACCGTGGTGTCATTCGCGGTGGTGGCGGCCATCTTCGGCCTGGAGCTGCTGGTCATGTCGCAGGTGTGCGAGGGCCAGGACGCCAGGAGAAGGTGGGCCTTCGGGTCCGTGCTGGTCCTCCTCTCCGCCGTGCTGGCGGCCGCCGGGCTGCTGGGCTTCGTCCTGCTGCTGAGGAGCCAGGCCAGCCTCCTGGGCTTCACCCTGACCTTCTGGTGTCAGTTCACCGCAgtcttcctcctcttcatcaACGGGATGAGTGGGCATCACATCCACAACATGGTCCTGCTGCCCACGGGAGAGCGAGGAAAATACTAG

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158325 lncRNA downstream 97339 3550840 ~ 3552977 (-) True G126275
TU158101 lncRNA downstream 514403 3133876 ~ 3135913 (-) False AMCG00000777
TU158015 lncRNA downstream 1092067 2557991 ~ 2558249 (-) True G126037
TU157974 lncRNA downstream 1130096 2427941 ~ 2520220 (-) True G126005
TU158357 lncRNA upstream 23423 3674281 ~ 3676927 (-) True G126296
TU158437 lncRNA upstream 593871 4244729 ~ 4245041 (-) True G126369
TU158504 lncRNA upstream 986509 4637367 ~ 4637640 (-) True G126428
TU158505 lncRNA upstream 987100 4637958 ~ 4638285 (-) True G126429
TU158506 lncRNA upstream 990200 4641058 ~ 4641341 (-) True G126430
AMCG00000800 mRNA downstream 13072 3613564 ~ 3637244 (-) True AMCG00000800
AMCG00000803 mRNA downstream 38926 3594282 ~ 3611390 (-) True AMCG00000803
AMCG00000796 mRNA downstream 68131 3576437 ~ 3582185 (-) True AMCG00000796
AMCG00000795 mRNA downstream 81667 3545289 ~ 3568649 (-) True AMCG00000795
AMCG00000794 mRNA downstream 133106 3511119 ~ 3517210 (-) True AMCG00000794
AMCG00000804 mRNA upstream 1828 3652686 ~ 3656552 (-) False AMCG00000804
AMCG00000802 mRNA upstream 11389 3662247 ~ 3667451 (-) True AMCG00000802
AMCG00000807 mRNA upstream 69555 3720413 ~ 3745555 (-) True AMCG00000807
AMCG00000811 mRNA upstream 240165 3891023 ~ 3894951 (-) True AMCG00000811
AMCG00000809 mRNA upstream 279419 3930277 ~ 3933300 (-) True AMCG00000809
TU158094 other downstream 501064 3131714 ~ 3149252 (-) True G126096
TU158093 other downstream 516499 3131714 ~ 3133817 (-) False G126096
TU158081 other downstream 600365 3044257 ~ 3049951 (-) True AMCG00000771
TU158078 other downstream 608352 3036931 ~ 3041964 (-) True G126089
TU157994 other downstream 1192433 2451868 ~ 2457883 (-) False G126017
TU158313 other upstream 1799 3652657 ~ 3656561 (-) False AMCG00000804
TU158503 other upstream 985238 4636096 ~ 4636516 (-) True G126427
TU158856 other upstream 1921847 5572705 ~ 5573027 (-) True G126700
TU159187 other upstream 3061100 6711958 ~ 6733817 (-) False AMCG00000888
TU159288 other upstream 3979057 7629915 ~ 7645722 (-) True G127039

Expression Profile