RNA id: AMCG00000802


Basic Information

Item Value
RNA id AMCG00000802
length 1518
RNA type mRNA
GC content 0.61
exon number 5
gene id AMCG00000802
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 3662247 ~ 3667451 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCATCACCAGACATGATGAAACCCCTCTTGAGAAACTCTGTGGAAGTGGAGCAGGCCCTGTCCGAGCTGAAGTGCCCCACCGTGGGGATCCTCGGCAGCGGTGACTTCGCCCGCTCCTTGGCCACCCGCCTTGTGAGCTCGGGCTTcagggtggtggtggggagcCGCAATCCCAAACGAAGCGCCAGCCTGTTCCCCCCCGGTGCCGAAGTCGCCACCCAGCAGGAGGCCGCTGGCCAGGCAGACGTAGTCTTCGTGGCCGTCTTCCGGGAGCATTACTCCACCCTGTGTGACCTGAAGGAGGCGCTGGCGGGGAAGGTGCTGGTGGATGTCAGCAACGACACGGAGCCCAGCCTCCGTCTGCAGTCCAACGCAGAACACTTGGGGTCGCTCTTCCCAGAATGCACGGTGGTGAAGGGGTTCAACGTCATCTCGGCCTGGGCGCTGCAGTCCGGTCCCAGAGATGGCAACAGGCAGTTGCCGAATAGTGCCGACCTCGCCTTCCCTCAGGTGCTGATTTGCAGTGACAGCAGAGAGGCCAAGAGCTCAGTGTCTCACCTGGCGCGCAGTATGGGTTTCATCCCGGTGGACATGGGGCCTCTGTCCTCCGCCAAGGAGATTGAAAGCATCCCCCTGCGCCTCTTCCCCTCCTGGAAGACCCCTGTCCTCTGTTCCCTGGGGCTCTTCTGCTTCTTCTACGGCTACAACTTCATCCGGGGGGTCATCCATCCCTTTGTCACCAAGGGCCAGAACAGCTTCTATAAGATCCCGGTGGAGATCGTGAACGTCTCGCTGCCCTGCGTGGCCTACGTGATGCTGTCCCTGGTGTACGTGCCCGGCATCCTGGCAGCCTTTCTGCAGCTGCGGCACGGCACCAAGTACCGGCGCTTCCCAGGCTGGCTCGATCGTTGGCTGCAGCAACGGAAGCAAATCGGCCTGCTGAGTTTCCTCTCGGCTGCGCTGCACGCCGTCTACAGCCTGTGCCTCCCGATGCGCAAGTCTGCCCGCTACCATCTGCTCAATGATGCTTTTAAACAGGTGAAGGCTGGACAAGAGAGCGCCtgggtggaggaggaggtgtgGAGGATGGAGATCTATCTGTCCTTCGGCATCCTGGCCCTGGCCGTGCTGTCCCTGCTGGCCATCACCTCGCTGCCCTCTGTTGGAAACTCGCTGAACTGGAGGGAGTTCAGCTTCATTCAGTCCAACCTGGGCTACACCGCACTACTGATCGCCACCCTGCACACTCTGACGTTCGGCTGGAAGAAAGCGTTCAACCCAGCGCAGTATAAATTCTACCTGCCGCCCACCTACGCCCTGGCCCTGGTGGTGCCCTGCGCCGTCCTGCTGTGTCGGACGTACCTGCTGCTGCCCTGCGTGAATGCCCGGCTGACCAAGATCCGCAGAGGCTGGGAACGGGGGCGGCTCACCCGCTTCCAGCTACCCGAAGAAATGGGCCACTGTAACGTGAACTCGGCTCAAGAGGATGTGAGCAACtgcATTGTCAAGATCTGA

Function

GO: NA

KEGG:

id description
K10142 STEAP3, TSAP6; metalloreductase STEAP3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158314 lncRNA downstream 5686 3553047 ~ 3656561 (-) True AMCG00000804
TU158325 lncRNA downstream 109270 3550840 ~ 3552977 (-) True G126275
TU158101 lncRNA downstream 526334 3133876 ~ 3135913 (-) False AMCG00000777
TU158015 lncRNA downstream 1103998 2557991 ~ 2558249 (-) True G126037
TU157974 lncRNA downstream 1142027 2427941 ~ 2520220 (-) True G126005
TU158357 lncRNA upstream 6830 3674281 ~ 3676927 (-) True G126296
TU158437 lncRNA upstream 577278 4244729 ~ 4245041 (-) True G126369
TU158504 lncRNA upstream 969916 4637367 ~ 4637640 (-) True G126428
TU158505 lncRNA upstream 970507 4637958 ~ 4638285 (-) True G126429
TU158506 lncRNA upstream 973607 4641058 ~ 4641341 (-) True G126430
AMCG00000804 mRNA downstream 5695 3652686 ~ 3656552 (-) False AMCG00000804
AMCG00000801 mRNA downstream 11389 3650316 ~ 3650858 (-) True AMCG00000801
AMCG00000800 mRNA downstream 25003 3613564 ~ 3637244 (-) True AMCG00000800
AMCG00000803 mRNA downstream 50857 3594282 ~ 3611390 (-) True AMCG00000803
AMCG00000796 mRNA downstream 80062 3576437 ~ 3582185 (-) True AMCG00000796
AMCG00000807 mRNA upstream 52962 3720413 ~ 3745555 (-) True AMCG00000807
AMCG00000811 mRNA upstream 223572 3891023 ~ 3894951 (-) True AMCG00000811
AMCG00000809 mRNA upstream 262826 3930277 ~ 3933300 (-) True AMCG00000809
AMCG00000810 mRNA upstream 267346 3934797 ~ 3941315 (-) True AMCG00000810
AMCG00000813 mRNA upstream 400493 4067944 ~ 4088896 (-) True AMCG00000813
TU158313 other downstream 5686 3652657 ~ 3656561 (-) False AMCG00000804
TU158094 other downstream 512995 3131714 ~ 3149252 (-) True G126096
TU158093 other downstream 528430 3131714 ~ 3133817 (-) False G126096
TU158081 other downstream 612296 3044257 ~ 3049951 (-) True AMCG00000771
TU158078 other downstream 620283 3036931 ~ 3041964 (-) True G126089
TU158503 other upstream 968645 4636096 ~ 4636516 (-) True G126427
TU158856 other upstream 1905254 5572705 ~ 5573027 (-) True G126700
TU159187 other upstream 3044507 6711958 ~ 6733817 (-) False AMCG00000888
TU159288 other upstream 3962464 7629915 ~ 7645722 (-) True G127039
TU159607 other upstream 5751545 9418996 ~ 9419325 (-) True G127292

Expression Profile