RNA id: AMCG00000805


Basic Information

Item Value
RNA id AMCG00000805
length 525
RNA type mRNA
GC content 0.60
exon number 1
gene id AMCG00000805
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 3762819 ~ 3763343 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAAGAGCAGAAGGATCAAAACAGTCGGGACTCGAGCGAGGGGGACTCGCTGTCCCCCCACCTGCCCTCGCCGCCCATCCCGGCGCACCCGGCCGCGCAGCAGGCGCACCGCACCACCAACTTTTTCATCGATAACATCCTGAGGCCGGACTTCGGCTGCAAGAAGGAGCTGGGCAGCCGGGAGCGGGCGCAGACCTCCGGGAGGGAGAATGTCAACCCCCTGGTCATCAGGCCGTCGCACCCCAGCACCCTGTGCCAGGATTCAAACTGTAGCAGCGACAGCACGTCTTCCTCCTCGTCGTCTTCCTCGTCCTCCAAACAGAGCCCCTCCAAGCAGGGCGACGGCAATGGACCTAACGCCACGAAATATGGAGAGAATAATTCCTCTCTGGTGGTTATGGGTGCGAATAATGGAGGCACAGCTCCGACTAAGGAGACCCAGCCGCTGCTGTGGCCTGCCTGGGTTTACTGCACAAGGTACTCAGACAGACCCTCATCTGGTAAGGCAATAGTTTGTGATTAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0048663 neuron fate commitment biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09319 EN; homeobox protein engrailed

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158362 lncRNA upstream 32763 3725920 ~ 3730056 (+) True G126301
TU158294 lncRNA upstream 89643 3670802 ~ 3673176 (+) True G126248
TU158279 lncRNA upstream 106238 3652673 ~ 3656581 (+) True G126240
TU158251 lncRNA upstream 204395 3555566 ~ 3558424 (+) True G126215
TU158053 lncRNA upstream 679232 3081746 ~ 3083587 (+) True G126068
TU158436 lncRNA downstream 481389 4244732 ~ 4245036 (+) True G126368
TU158587 lncRNA downstream 1113524 4876867 ~ 4880503 (+) True G126500
TU158588 lncRNA downstream 1113524 4876867 ~ 4877646 (+) False G126500
TU158693 lncRNA downstream 1357702 5121045 ~ 5124330 (+) True G126568
TU158694 lncRNA downstream 1357861 5121204 ~ 5123938 (+) False G126568
AMCG00000806 mRNA upstream 64283 3686259 ~ 3698536 (+) True AMCG00000806
AMCG00000799 mRNA upstream 102281 3656867 ~ 3660538 (+) True AMCG00000799
AMCG00000797 mRNA upstream 110942 3638170 ~ 3651877 (+) True AMCG00000797
AMCG00000798 mRNA upstream 170677 3583180 ~ 3592142 (+) True AMCG00000798
AMCG00000790 mRNA upstream 186911 3569413 ~ 3575908 (+) True AMCG00000790
AMCG00000808 mRNA downstream 145311 3908654 ~ 3928160 (+) True AMCG00000808
AMCG00000812 mRNA downstream 238783 4002126 ~ 4047678 (+) True AMCG00000812
AMCG00000816 mRNA downstream 536188 4299531 ~ 4306351 (+) True AMCG00000816
AMCG00000814 mRNA downstream 567025 4330368 ~ 4349297 (+) True AMCG00000814
AMCG00000815 mRNA downstream 588035 4351378 ~ 4366946 (+) True AMCG00000815
TU157662 other upstream 2066572 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 2162180 1599696 ~ 1600639 (+) False AMCG00000723
TU157377 other upstream 3421048 339640 ~ 341771 (+) False G125561
TU159397 other downstream 4853856 8617199 ~ 8620195 (+) True G127134
TU159756 other downstream 6384514 10147857 ~ 10154187 (+) False AMCG00000949
TU160309 other downstream 8236321 11999664 ~ 12011425 (+) True AMCG00001002
TU161370 other downstream 11406568 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 11645769 15409112 ~ 15420880 (+) False G128823

Expression Profile