RNA id: AMCG00000807


Basic Information

Item Value
RNA id AMCG00000807
length 1509
RNA type mRNA
GC content 0.56
exon number 14
gene id AMCG00000807
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 3720413 ~ 3745555 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAGCAGAAGGAGGATGTGTTCTTGGCTGAAAAGGTTTTCTCCAATGAAAAGTTCCCCCAGGTTGAAGAACACTGCCAGCATGTTACCCAGTGTGATGCGGCAATTTTATCAGTTTTAACAAATGCCTCCAATCAGTTCACACTGGAAACAGCTTCTCTTCAGGAGCACTTTCAACAGCTCCAGTTTGAGATCATGGTCATCAATTCTTCCATCCCTGGAGTCGGggaaagtgctgtcaagataAACCAACTGAACGAGGACCTGCAGACGGTCCAGCAGACGAGCTCTGAGCTGCAGAAGAGAATAGAGAGCATGAATCTCCAACCAGGACCTCCTGGCTCCCCCGGTCCCCGAGGCATGAAGGGAGACCCAGGGACTCCAGGTATATCTGGTGCAAAGGGCGACAGAGGCACGGCCGGTGAGAAGGGGACTCCCGGGAGTCTTGGATcgaagggagagaggggagagcaAGGTCTCCGAGGCCAGGCAGGTGACAaaggagagatgggggaggCAGGACCAGCTGGACCAGTCGGACCTCCTGGGTccagaggagagaagggggagcCCGGCCAGAATGGTACTGTTCAAAAGGTGATCCGGGCACCGCATCACAGAGAGGAGAGCCGGGAGTCCCTGGTGCCAAAGGACAGACCGGGAGTCCAGGTTTACAAGGAACCAAAGGAGACAGAGGAGCCCAGGGAGAGCCGGGGACCAACGGAATCCCAGGAACTCCAGGATCGAGTGGACCACCGGGAGACAAAGGTGCTGCAGGAGATCCTGGTGCTGCCGGACCCAGGGGGGGTCCCGGACCTGCTGGGCCCACTGGGGTCAAGGGGGACAGGGGGGCCAAAGGAGACACCGGACCAAGCGGGATTGCAGGACCTAGAGGCCCGGCGGGAGATACGGGGGCTAAAGGCGACAGAGGGGCGCCAGGGATTACAGGGGATTCAAGGTGTTAAAGGCAGCACAGGAGACAGAGGTTTTTCTATTGTAAGAATCGCTGGTGGAGGATCGCGAGGCCGTGCTGAGGTTTTCTATGACAACCAGTGGGGAACGATATGTGATGACAGCTGGGATGTGAACGATGGAACCGTTTTCTGTAAAATGCTGGGGTATCAAAGAGCATCCTCTGTTTTTACCTCTGGGGGTGTTGCCAATAAAGTTGTGTGGAGCACAGGGCAAAGCATGGTGAGCCAGCTGCAATTTTGGAAAAACAACTCTTCATGTTTTTGGTTGGTGGTCATTATCCTCTTGGAACAGAAAGATCCATCACACAGTGCACATCCAACGGCTGGGGTACCCACAATTGTGGCCACACCGAAGATGCCGGggttcagtgtgtgtgacacGAGAAGCTGGGCCTCGTGGAGAAGAGAAGCGATGGCGGCGGTCCAGCTGGATGCCGTTCTCCTGCGCATAGGGCACGGACTGAGCCGTCTAGACAACAAATTGCCCATCCGCTCTACCTGCTGCCTGTGCGTATGTGCCACGGGCAAGCAGACG

Function

GO:

id name namespace
GO:0002376 immune system process biological_process

KEGG:

id description
ko04660 T cell receptor signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158357 lncRNA downstream 43486 3674281 ~ 3676927 (-) True G126296
TU158314 lncRNA downstream 63852 3553047 ~ 3656561 (-) True AMCG00000804
TU158325 lncRNA downstream 167436 3550840 ~ 3552977 (-) True G126275
TU158101 lncRNA downstream 584500 3133876 ~ 3135913 (-) False AMCG00000777
TU158015 lncRNA downstream 1162164 2557991 ~ 2558249 (-) True G126037
TU158437 lncRNA upstream 499174 4244729 ~ 4245041 (-) True G126369
TU158504 lncRNA upstream 891812 4637367 ~ 4637640 (-) True G126428
TU158505 lncRNA upstream 892403 4637958 ~ 4638285 (-) True G126429
TU158506 lncRNA upstream 895503 4641058 ~ 4641341 (-) True G126430
TU158508 lncRNA upstream 897125 4642680 ~ 4643466 (-) True G126432
AMCG00000802 mRNA downstream 52962 3662247 ~ 3667451 (-) True AMCG00000802
AMCG00000804 mRNA downstream 63861 3652686 ~ 3656552 (-) False AMCG00000804
AMCG00000801 mRNA downstream 69555 3650316 ~ 3650858 (-) True AMCG00000801
AMCG00000800 mRNA downstream 83169 3613564 ~ 3637244 (-) True AMCG00000800
AMCG00000803 mRNA downstream 109023 3594282 ~ 3611390 (-) True AMCG00000803
AMCG00000811 mRNA upstream 145468 3891023 ~ 3894951 (-) True AMCG00000811
AMCG00000809 mRNA upstream 184722 3930277 ~ 3933300 (-) True AMCG00000809
AMCG00000810 mRNA upstream 189242 3934797 ~ 3941315 (-) True AMCG00000810
AMCG00000813 mRNA upstream 322389 4067944 ~ 4088896 (-) True AMCG00000813
AMCG00000818 mRNA upstream 571463 4317018 ~ 4326577 (-) True AMCG00000818
TU158313 other downstream 63852 3652657 ~ 3656561 (-) False AMCG00000804
TU158094 other downstream 571161 3131714 ~ 3149252 (-) True G126096
TU158093 other downstream 586596 3131714 ~ 3133817 (-) False G126096
TU158081 other downstream 670462 3044257 ~ 3049951 (-) True AMCG00000771
TU158078 other downstream 678449 3036931 ~ 3041964 (-) True G126089
TU158503 other upstream 890541 4636096 ~ 4636516 (-) True G126427
TU158856 other upstream 1827150 5572705 ~ 5573027 (-) True G126700
TU159187 other upstream 2966403 6711958 ~ 6733817 (-) False AMCG00000888
TU159288 other upstream 3884360 7629915 ~ 7645722 (-) True G127039
TU159607 other upstream 5673441 9418996 ~ 9419325 (-) True G127292

Expression Profile