RNA id: AMCG00000808


Basic Information

Item Value
RNA id AMCG00000808
length 2223
RNA type mRNA
GC content 0.50
exon number 22
gene id AMCG00000808
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 3908654 ~ 3928160 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACCCACACATGACATCACTTCCCGTCCATCATGGCGGCCACCTCGGTGTTCCAGCGGGTGCGGACCGGGTCCAGACTGGGAGCCCAGTACGACCAGGACGGCAACATCATCCAGGTGGAGACCCGGGAAGATGAAGAACAGAATATTAAACTGGCGGAGATCCTGGAGCTGCTGTTGGCTGCTGGATACTTCAGGGCTCGAATCAAAGGGCTGTCTCCATTTGACAAGGTGGTGGGAGGGATGACCTGGTGCATCACAACCTGCAACTTTGATATCGACGTTGATTTGCTTTTCCAAGAAAACTCGACGATTGGTCAGAAGATAGCACTGACTGAGAAAATTGTCTCCGTTTTGCCGAAAATGAAATGTCCCCATCGCCTGGAGCCCCATCAGATCCAGGGCCTTGACTTCATTCACATCTTTCCCGTTGTGCAGTGGCTGGTAAAGCGTGCCATTGAAACCAGGGAGGAGATGGGAGATTATATTCGCTCCTATTCGGTGTCGCAGTTTCAGAAGACTCACCGCATCCCAGAAGAGGTGTATAAACCCCAGAGGAAATACAAGAGACAAGTCGGTGCTGAGGAGCTGGCGGACGAAGAGTCCCGCGTTCATTCCACGCTCCTGGAGTACGGGAGGCGCTATGGATTCAGCAAACAAGTCAGGCAAGACAAAGCCGAAGACAAGAAAGTCCCCTCCTCACAAGGATTACCACCTGGGATGACTGAAGTCTCCGAAGAGGAGGACCTTCAAGCAGCTGAAGAGcTTCGCATTAAGACGTTGATGACGGGAATGGCGGTGATGGCAAGCGAGGAGGGGAAGCTGACCGCCAGCACGGTGGGGCAGATAGTGGGACTGCAGTCGGAGGAGATCAAGCAGATTGCGTCCGAATACGCCGAGAAGCAAATCGAACTCTCAGCCGAGGACCGCCCTGAACGCTTCGGACCGGCCCAGCAGCACCGCAGACTGGTGGCGTCTCTCAACAAGCAGATCCAGCAGAAAACGAAGCAACTGGAAGAGcTCCAAGCGAAACACTCGGAAGTTCAAGCAGGCTGTGAGGAGGCGAAAATCAAGTTGACGGAGGCTACAAAACTCACAGAGAGTTTGGAGAAGGAACTTTCTGCTTTAGAAGAGGTCGAATCTCAAGCTGATTCAAGtGTCCTACAGAAACTGAGAGCCTTGGTTGCTATGAATGAAAACCTTAAAACCCAAGAGCAGGAATTCCGCACTCACTGCAGGGAGGAAATGACTCGTCTCCAGCAGAGCATCGAAAACCTGAAAATCGAGTCGGGAGACGACACGGGAGAAGACAAGgAACGAAACCAGCTCATAGAAAAACAGTACAACACCGACCGAGAGAAGCTACAGAAGATCCGGATGCTTCTGGCCCGCAGGAATCGGGAAATTGCTATACTGCAGCGAAAGGTTGACGAGGTGCCAAGCCGGGCTGAGCTAACCCAGTATCAGAAGAGATTTATTGAACTCTACGGTCAGGtggCAGCAACACACAAGGAAACCAAACAGTTCTTCACACTGTACAATACGTTGGATGACAAAAAGGTCTTCCTGGAGAAAGAGGTTAACCTGCTGAACTCAATCCATGACAACTTTCAGCAGGCCATGGCGTCTTCTGGAGCGAAAGAACAGTTTCTACGACAGATGGAGCAGATCGTAGAGGGCATCAAACAGAACAGAATTAAgATGGAGAAGAAGAAGCAAGAGAACAAAATGCGCCGCGATCAGCTAAACGACGAGTATCTGGAGCTGCTGGAGAAGCAGAGGCTGTACTTCAAGACGGTGAAGGACTTCAAAGAGGAGTGCAGAAAGAACGAGATGCTTCTCTCAAAATTGCGAGCCAAGGGGGCGTCTTAGACAACACTGTATATGTGAGCAACGTGTTTAGTGTCAAAGATTGTTTTCTACACATAGTCTATTGTAAAGTTTTTCTCAATGTAACCAAGAGCTCTTAAACCTGATCTGTAAACTAAACTCAGCTGTTTCCTGTTAGTTCATAGAGGACATTGAATCCGTTCTCATTCTCTCCCACATCTGTCATCGGAGCAAAACATCTGCCCAGAGCGCGATCACACACTAATAATGCCTGTATCGTCTGCCGTGAGCTCGTGCCCGCAGATTGGGTCCGCTACTCTGCTTAAGGTTAATTATGGTGAATGAAtttgctaattaaaatgttccacGTAATTGTGCAACAACAATGAGGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158362 lncRNA upstream 178598 3725920 ~ 3730056 (+) True G126301
TU158294 lncRNA upstream 235478 3670802 ~ 3673176 (+) True G126248
TU158279 lncRNA upstream 252073 3652673 ~ 3656581 (+) True G126240
TU158251 lncRNA upstream 350230 3555566 ~ 3558424 (+) True G126215
TU158053 lncRNA upstream 825067 3081746 ~ 3083587 (+) True G126068
TU158436 lncRNA downstream 316572 4244732 ~ 4245036 (+) True G126368
TU158587 lncRNA downstream 948707 4876867 ~ 4880503 (+) True G126500
TU158588 lncRNA downstream 948707 4876867 ~ 4877646 (+) False G126500
TU158693 lncRNA downstream 1192885 5121045 ~ 5124330 (+) True G126568
TU158694 lncRNA downstream 1193044 5121204 ~ 5123938 (+) False G126568
AMCG00000805 mRNA upstream 145311 3762819 ~ 3763343 (+) True AMCG00000805
AMCG00000806 mRNA upstream 210118 3686259 ~ 3698536 (+) True AMCG00000806
AMCG00000799 mRNA upstream 248116 3656867 ~ 3660538 (+) True AMCG00000799
AMCG00000797 mRNA upstream 256777 3638170 ~ 3651877 (+) True AMCG00000797
AMCG00000798 mRNA upstream 316512 3583180 ~ 3592142 (+) True AMCG00000798
AMCG00000812 mRNA downstream 73966 4002126 ~ 4047678 (+) True AMCG00000812
AMCG00000816 mRNA downstream 371371 4299531 ~ 4306351 (+) True AMCG00000816
AMCG00000814 mRNA downstream 402208 4330368 ~ 4349297 (+) True AMCG00000814
AMCG00000815 mRNA downstream 423218 4351378 ~ 4366946 (+) True AMCG00000815
AMCG00000819 mRNA downstream 470426 4398586 ~ 4399059 (+) True AMCG00000819
TU157662 other upstream 2212407 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 2308015 1599696 ~ 1600639 (+) False AMCG00000723
TU157377 other upstream 3566883 339640 ~ 341771 (+) False G125561
TU159397 other downstream 4689039 8617199 ~ 8620195 (+) True G127134
TU159756 other downstream 6219697 10147857 ~ 10154187 (+) False AMCG00000949
TU160309 other downstream 8071504 11999664 ~ 12011425 (+) True AMCG00001002
TU161370 other downstream 11241751 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 11480952 15409112 ~ 15420880 (+) False G128823

Expression Profile