RNA id: AMCG00000810


Basic Information

Item Value
RNA id AMCG00000810
length 2664
RNA type mRNA
GC content 0.52
exon number 14
gene id AMCG00000810
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 3934797 ~ 3941315 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTGCGGggaacagcagcagctcctGTTGGGTCCTTCGTGTTTCTGCTCAGGCAGTTGAGAAGGGCGCCTGTGTGCTGGGGTCCGCGCGTTGCGCACACGTGTGTGAGGAGAGTCTGCAAACATGGCGGATCTGCAGATGAAACTTCTGAGGAAGAAAATCCAGAAAAGAAGCGACAAGAACAAGAAGCGCAATTTATTGAAGAAGCAGAAGCGTGAGGATGAGGATGAAGAGTGTGACCCCGCACTGTCGGCGACGTGCCCTGACACACACGATGAAGTCGAAGACCAGTCGACTCCAAAGCCCGTGAAGaagctgaagaaaaagaaactcaTGGAAGCCAACGCAGTTGCCGGGACCCCAACTTAAACCGAAAAGCCCAAGAAGGTCAAggagcaggaagaggaggaggaggaggaaggggacaGTGAGGCTGCTGTTGAGAACGTGGAGGGCTCAGCCGACGAAGAGTCTGAAGATGGAGAGGACGATCAACCGCAGCTGCCTCTAGGGCTCACGGGCGCGTTTGAAGACACTTCCTTCGCCTCCCTGTCCGATGCGGTCAGCGAACACACACTGAAGGGCGTCGTAGACATGGGCTTCGAGCACATGACCGAGAtccagcacaagagcatccggCCCCTGCTGGAGGGCAGGGACGTGTTGGCCGCCGCCAGGACAGGCAGCGGGAAAACCCTGGCCTTCCTGATCCCCTCCATCGAGCTGATCTACAAGCTGAAGTTCATGCCTAGAAATGGCACCGGAGTTGTCATCCTGTCTCCCACCCGTGAGCTGGCCATGCAGACCTACGGGGTGCTGAAGGATTTAATGACCCACCACGTGCACACGTATGGTCTGGTCATGGGGGGCAGCAATCGCTCCGCCGAGGCTCAGAAGCTCGCTAACGGAGTCAACATCCTGGTGGCCACACCCGGGAGACTGCTGGACCACCTGCAGAATACCCCAGGCTTCATGTACAAGAACCTGCAGTGTCTGATCATCGACGAGGCAGACCGCATCCTCGAGGTCGGGTTCGAAGAGGAGCTGAAGCAGATCATCAAACTCCTGCCCAGTAAGTGCGGTCCTTTAACGCCGAGCCGTCGCTCCGGCCTCGATACGCGCAAAGTGGAAGACCTGGCTCGGATCTCGTTGAAGAAGGAGCCCTTGTATGTCGGGGTGGACGACAACAAGGAGACAGCGACTGTCGACGGTCTGGAGCAGGGTTACGTAGTGTGTCCCTCGGAGAAGAGGTTCCTGCTGCTCTTCACCTTCCTGAAGAAGAACCGCAAGAAGAAGCTCATGGTGTTCTTCTCCTCCTGCATGTCCGTCAAATTCCACTACGAGCTGCTGAACTACATCGACCTCCCTGTCATGGCCATTCACGGAAAGCAGAAGCAGACCAAGCGCACCACCACCTTCTTCCAGTTCTGCAACGCGGACTCGGGCATCCTGCTGTGCACGGACGTGGCCGCCAGGGGGCTGGACATCCCAGAGGTGGACTGGATTGTGCAGTACGACCCTCCCGACGATCCCAAGGAATACATCCATCGCGTCGGAAGAACCGCAAGAGGCATCAACGGCCAGGGACACGCCCTGCTGATCCTGAGGCCCGAAGAACTGGGGTTCCTCCGCTACCTCAAACAAGCCAAGGTCCCTCTGAGCGAGTTTGAGTTCTCCTGGGCCAAGATCTCGGACATTCAGTCACAGctCGACAAGCTGATCGAGAAGAACTACTACCTGCACAAGTCTGCGCAGGAGGCGTACAAGGCCTATGTCCGTGCATACGACTCGCATTCCCTGAAGCAGATCTACAGCGTCAACACCCTGGACCTGCCCAAGGTGGCCATCTCCTTTGGGTTCAAGGTGCCACCCTACGTGGACCTCAACGTGAACAGCAGCAAGGGCGTGAGGATGCAGAAGCGAGGTGGCGGAGGAGGGTTCGGGTACCAGAAGACCAAGAACGTCTACAAGTCGAAGATCTTCAAACACGTCAGCAAGGGCCGGACGGACAGGAGGCAGTTTTCCCGCTGAGGCCCGTCATTTTATATTGGAGCgagaaaatagttttgtttttttacaggagaagattaataaataacctGATGCCGTATGAAAGCGCTCTGCCGTGTTGACGTGCAATTCCCCGAGAGAGACGATCTGCTCGTACTGTCCGTTTATCCGTCGGGAGCGTTCACTCTTTCTAGTTATTTAATTGGTAGTTTTCGAGATGTGTATCTTAAAACCGCTGTAATGTTTCTCTGTCCTcttttgttctgctttgtttccgcaagaataaaaaaggaaaaacttgcCAAACTACATTTCCAGCGTCTCCACATGTATCCAAAGAGTTAATCCTTCAGTTTATACTTTATACTGCAGATATTTTATAGCATGCTAATGTTACACACCATTTTTAGGAGACTTAATTCTCATTTAATTGTACATCCCTCCTCTGTTAGTAATTTTACATTGTGTAGTATACTATGTGTTGATTATGAACTATAAGAATAGTTTCATCATGGGATACTGGATTCATTGTTTAAACAGactaatagaaaacaaaaattgttTTTCACGTTGTAAATCTCCGCTATTGTAGAAAAGGTACCGACAGGCCAGAGTTATAAGAGTCTAGAAATGGTATTgtagtattttattcata

Function

GO:

id name namespace
GO:0030099 myeloid cell differentiation biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K13179 DDX18, HAS1; ATP-dependent RNA helicase DDX18/HAS1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158357 lncRNA downstream 257870 3674281 ~ 3676927 (-) True G126296
TU158314 lncRNA downstream 278236 3553047 ~ 3656561 (-) True AMCG00000804
TU158325 lncRNA downstream 381820 3550840 ~ 3552977 (-) True G126275
TU158101 lncRNA downstream 798884 3133876 ~ 3135913 (-) False AMCG00000777
TU158015 lncRNA downstream 1376548 2557991 ~ 2558249 (-) True G126037
TU158437 lncRNA upstream 303414 4244729 ~ 4245041 (-) True G126369
TU158504 lncRNA upstream 696052 4637367 ~ 4637640 (-) True G126428
TU158505 lncRNA upstream 696643 4637958 ~ 4638285 (-) True G126429
TU158506 lncRNA upstream 699743 4641058 ~ 4641341 (-) True G126430
TU158508 lncRNA upstream 701365 4642680 ~ 4643466 (-) True G126432
AMCG00000809 mRNA downstream 1497 3930277 ~ 3933300 (-) True AMCG00000809
AMCG00000811 mRNA downstream 39846 3891023 ~ 3894951 (-) True AMCG00000811
AMCG00000807 mRNA downstream 189242 3720413 ~ 3745555 (-) True AMCG00000807
AMCG00000802 mRNA downstream 267346 3662247 ~ 3667451 (-) True AMCG00000802
AMCG00000804 mRNA downstream 278245 3652686 ~ 3656552 (-) False AMCG00000804
AMCG00000813 mRNA upstream 126629 4067944 ~ 4088896 (-) True AMCG00000813
AMCG00000818 mRNA upstream 375703 4317018 ~ 4326577 (-) True AMCG00000818
AMCG00000817 mRNA upstream 439300 4380615 ~ 4387720 (-) True AMCG00000817
AMCG00000821 mRNA upstream 460424 4401739 ~ 4404141 (-) True AMCG00000821
AMCG00000820 mRNA upstream 488432 4429747 ~ 4464744 (-) True AMCG00000820
TU158313 other downstream 278236 3652657 ~ 3656561 (-) False AMCG00000804
TU158094 other downstream 785545 3131714 ~ 3149252 (-) True G126096
TU158093 other downstream 800980 3131714 ~ 3133817 (-) False G126096
TU158081 other downstream 884846 3044257 ~ 3049951 (-) True AMCG00000771
TU158078 other downstream 892833 3036931 ~ 3041964 (-) True G126089
TU158503 other upstream 694781 4636096 ~ 4636516 (-) True G126427
TU158856 other upstream 1631390 5572705 ~ 5573027 (-) True G126700
TU159187 other upstream 2770643 6711958 ~ 6733817 (-) False AMCG00000888
TU159288 other upstream 3688600 7629915 ~ 7645722 (-) True G127039
TU159607 other upstream 5477681 9418996 ~ 9419325 (-) True G127292

Expression Profile