RNA id: AMCG00000812



Basic Information


Item Value
RNA id AMCG00000812
length 952
RNA type mRNA
GC content 0.49
exon number 13
gene id AMCG00000812
representative True

Chromosome Information


Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 4002126 ~ 4047678 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATTAATGTACTGTGTTGGCTCTGATGGCCGAAGCGAACGGAAGGCCAGCACATTTAACGGCAAAGTCATTAAGTTAAGACAAGGTCTGGAGGACCTGGGAGTGAGCAATCCGGAGAAGAACTGGAAGGGCATCGCCATTTCTCTCGTGGTCATTATAATCGTGTGCTCCTTCATTGCTCTCGCCATTGTTCTTCTGTCTAAAGACGATGCTACAAAGTCGTTGGGATCGAGCTTAACTCTGGAAGATCTCCTTTCAGAGGAATTTACTGTTCACCACCCGGAGGCAAAGTGGATAAACGACGACCAAATTGTTTACCGGAACAGAGACGGCCATGTCATGAaacttaatttgaaaaacaaccaaacagagATGCTTTTGAAAAACACCACTTTTGTGAGTAACAAatCCTCCTACTCGCTGacatttctgcacttcagtcgAGATTTACCGGAGCAGCAGTGCAGTGCGGCGCTCTACATCAAAatcTTCCGGCACTCTTTCTCAGCTTCATATTCAATATACAACTTGCACACAGGGGAAGTCTGGGAGCTGAACCCCCCCGAGGTGCCGGATTCGGTGTTACAGTTTGCTTCCTGGGGGATCCAGAAACAGCAGCTGGAAGTGCAGAGCAGCGCTTTGAGACTGACGTCATCGGGGAAAGAAGGTGTTGTTTTTAACGGAATAGCAGATTGGCTCTATGAAGAGGAACTGCTGCAGTCTCATGTCGCCCACTGGTGGTCCCCCAATGGAGAAAAGCTGGCGTTCCTGATGATTAATGACTCCCTGGTCCCAAGCATGGTCCTTCCTCGCTTTACGGGCGAGCTATACCCCAAAGGACGGCAGTATCCCTATCCCAAGGCAGGCCAGGTTAACCCTTCAGTAAAGCTCTATGTGGCGAATCTAAATGGGATCCAAACAGTGGAAATGATGCCCCCAGACAGATTTCAAAAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU158362 lncRNA upstream 272070 3725920 ~ 3730056 (+) True G126301
TU158294 lncRNA upstream 328950 3670802 ~ 3673176 (+) True G126248
TU158279 lncRNA upstream 345545 3652673 ~ 3656581 (+) True G126240
TU158251 lncRNA upstream 443702 3555566 ~ 3558424 (+) True G126215
TU158053 lncRNA upstream 918539 3081746 ~ 3083587 (+) True G126068
TU158436 lncRNA downstream 197054 4244732 ~ 4245036 (+) True G126368
TU158587 lncRNA downstream 829189 4876867 ~ 4880503 (+) True G126500
TU158588 lncRNA downstream 829189 4876867 ~ 4877646 (+) False G126500
TU158693 lncRNA downstream 1073367 5121045 ~ 5124330 (+) True G126568
TU158694 lncRNA downstream 1073526 5121204 ~ 5123938 (+) False G126568
AMCG00000808 mRNA upstream 73966 3908654 ~ 3928160 (+) True AMCG00000808
AMCG00000805 mRNA upstream 238783 3762819 ~ 3763343 (+) True AMCG00000805
AMCG00000806 mRNA upstream 303590 3686259 ~ 3698536 (+) True AMCG00000806
AMCG00000799 mRNA upstream 341588 3656867 ~ 3660538 (+) True AMCG00000799
AMCG00000797 mRNA upstream 350249 3638170 ~ 3651877 (+) True AMCG00000797
AMCG00000816 mRNA downstream 251853 4299531 ~ 4306351 (+) True AMCG00000816
AMCG00000814 mRNA downstream 282690 4330368 ~ 4349297 (+) True AMCG00000814
AMCG00000815 mRNA downstream 303700 4351378 ~ 4366946 (+) True AMCG00000815
AMCG00000819 mRNA downstream 350908 4398586 ~ 4399059 (+) True AMCG00000819
AMCG00000823 mRNA downstream 588614 4636292 ~ 4642779 (+) True AMCG00000823
TU157662 other upstream 2305879 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 2401487 1599696 ~ 1600639 (+) False AMCG00000723
TU157377 other upstream 3660355 339640 ~ 341771 (+) False G125561
TU159397 other downstream 4569521 8617199 ~ 8620195 (+) True G127134
TU159756 other downstream 6100179 10147857 ~ 10154187 (+) False AMCG00000949
TU160309 other downstream 7951986 11999664 ~ 12011425 (+) True AMCG00001002
TU161370 other downstream 11122233 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 11361434 15409112 ~ 15420880 (+) False G128823

Expression Profile