RNA id: AMCG00000816


Basic Information

Item Value
RNA id AMCG00000816
length 396
RNA type mRNA
GC content 0.63
exon number 3
gene id AMCG00000816
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 4299531 ~ 4306351 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGAGCATCCCTGGTGACGTTAATTGAAATCCGAAAAAGCAAGAGCCGCCGCCATGCATCTTATAATGATTGTGCCCTCAGCGACTCGGCCCTGCTGGCGCTCCTGGCCTGCTCTCGGTGCTCCGGCATCGTGGGCCGCCCATGCTGCAATGATGGGACGAGCACCTCCTCTGCGTCCGCTGCCGCCAGGGCTGGAGCCGGGGGAGCCAGGGGAGCTGCCCCACGTTCCTGCAGCGCTGCCGACGCCGACACCATTGCGGCCCACAGGGAGGAGCTGGCGGACCTGTTCGAGTACCCCGTGTGCTTTCACTACATGCAGCCGCCCATGCTTCAGTGCCAGGCTGGACACCTGGTGTGTAACACGTGCCTTCCCAGGGTGACCAGCTGTCTGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158436 lncRNA upstream 54495 4244732 ~ 4245036 (+) True G126368
TU158362 lncRNA upstream 569475 3725920 ~ 3730056 (+) True G126301
TU158294 lncRNA upstream 626355 3670802 ~ 3673176 (+) True G126248
TU158279 lncRNA upstream 642950 3652673 ~ 3656581 (+) True G126240
TU158251 lncRNA upstream 741107 3555566 ~ 3558424 (+) True G126215
TU158587 lncRNA downstream 570516 4876867 ~ 4880503 (+) True G126500
TU158588 lncRNA downstream 570516 4876867 ~ 4877646 (+) False G126500
TU158693 lncRNA downstream 814694 5121045 ~ 5124330 (+) True G126568
TU158694 lncRNA downstream 814853 5121204 ~ 5123938 (+) False G126568
TU158695 lncRNA downstream 820208 5126559 ~ 5126808 (+) True G126569
AMCG00000812 mRNA upstream 251853 4002126 ~ 4047678 (+) True AMCG00000812
AMCG00000808 mRNA upstream 371371 3908654 ~ 3928160 (+) True AMCG00000808
AMCG00000805 mRNA upstream 536188 3762819 ~ 3763343 (+) True AMCG00000805
AMCG00000806 mRNA upstream 600995 3686259 ~ 3698536 (+) True AMCG00000806
AMCG00000799 mRNA upstream 638993 3656867 ~ 3660538 (+) True AMCG00000799
AMCG00000814 mRNA downstream 24017 4330368 ~ 4349297 (+) True AMCG00000814
AMCG00000815 mRNA downstream 45027 4351378 ~ 4366946 (+) True AMCG00000815
AMCG00000819 mRNA downstream 92235 4398586 ~ 4399059 (+) True AMCG00000819
AMCG00000823 mRNA downstream 329941 4636292 ~ 4642779 (+) True AMCG00000823
AMCG00000822 mRNA downstream 345631 4651982 ~ 4667416 (+) True AMCG00000822
TU157662 other upstream 2603284 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 2698892 1599696 ~ 1600639 (+) False AMCG00000723
TU157377 other upstream 3957760 339640 ~ 341771 (+) False G125561
TU159397 other downstream 4310848 8617199 ~ 8620195 (+) True G127134
TU159756 other downstream 5841506 10147857 ~ 10154187 (+) False AMCG00000949
TU160309 other downstream 7693313 11999664 ~ 12011425 (+) True AMCG00001002
TU161370 other downstream 10863560 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 11102761 15409112 ~ 15420880 (+) False G128823