RNA id: AMCG00000819



Basic Information


Item Value
RNA id AMCG00000819
length 474
RNA type mRNA
GC content 0.61
exon number 1
gene id AMCG00000819
representative True

Chromosome Information


Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 4398586 ~ 4399059 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGCCAACCCAAGTGCGACGCATCATGACGGCGGTCAAGCCCAAAACGAAGTGGACGGAGAAATACTTCTGGGGCTACATGACCCTCCTCCCCATCGCAGACACCTTCTTCTACCTCAGCTCGGTGCTCAACCCCCTGCTGTACAACCTGTCCTCCAGACAATTCAGGGAGGTCTTCCTGCAGGTGATGCGCTGCCGCCTGACCATCGAGCACGTCAACAGGCGGGTCCTGCGCCGGTCGGACGTGGCCTCGGCCCGCTCCACACGCCCGCTCATGCTGGCCTCCATCAGGCGAGGGCTGTCCTCCTACAACAAGGCCAAATCCCACAAATTCACCACCTTCCAGAGACCCGCCCCCACCCCAGCCTCAGACAGCCCGAGTCCGCCCACCGACTCCACGGACCTCACCAACGGCGATCAAAGCGCGGTGGACCTTGTGAGACAAAAGAATAGCGTTCTTGAGAGCGAAGTCTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU158436 lncRNA upstream 153550 4244732 ~ 4245036 (+) True G126368
TU158362 lncRNA upstream 668530 3725920 ~ 3730056 (+) True G126301
TU158294 lncRNA upstream 725410 3670802 ~ 3673176 (+) True G126248
TU158279 lncRNA upstream 742005 3652673 ~ 3656581 (+) True G126240
TU158251 lncRNA upstream 840162 3555566 ~ 3558424 (+) True G126215
TU158587 lncRNA downstream 477808 4876867 ~ 4880503 (+) True G126500
TU158588 lncRNA downstream 477808 4876867 ~ 4877646 (+) False G126500
TU158693 lncRNA downstream 721986 5121045 ~ 5124330 (+) True G126568
TU158694 lncRNA downstream 722145 5121204 ~ 5123938 (+) False G126568
TU158695 lncRNA downstream 727500 5126559 ~ 5126808 (+) True G126569
AMCG00000815 mRNA upstream 31640 4351378 ~ 4366946 (+) True AMCG00000815
AMCG00000814 mRNA upstream 49289 4330368 ~ 4349297 (+) True AMCG00000814
AMCG00000816 mRNA upstream 92235 4299531 ~ 4306351 (+) True AMCG00000816
AMCG00000812 mRNA upstream 350908 4002126 ~ 4047678 (+) True AMCG00000812
AMCG00000808 mRNA upstream 470426 3908654 ~ 3928160 (+) True AMCG00000808
AMCG00000823 mRNA downstream 237233 4636292 ~ 4642779 (+) True AMCG00000823
AMCG00000822 mRNA downstream 252923 4651982 ~ 4667416 (+) True AMCG00000822
AMCG00000829 mRNA downstream 285636 4684695 ~ 4703265 (+) True AMCG00000829
AMCG00000830 mRNA downstream 309039 4708098 ~ 4708621 (+) True AMCG00000830
AMCG00000828 mRNA downstream 311572 4710631 ~ 4720547 (+) True AMCG00000828
TU157662 other upstream 2702339 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 2797947 1599696 ~ 1600639 (+) False AMCG00000723
TU157377 other upstream 4056815 339640 ~ 341771 (+) False G125561
TU159397 other downstream 4218140 8617199 ~ 8620195 (+) True G127134
TU159756 other downstream 5748798 10147857 ~ 10154187 (+) False AMCG00000949
TU160309 other downstream 7600605 11999664 ~ 12011425 (+) True AMCG00001002
TU161370 other downstream 10770852 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 11010053 15409112 ~ 15420880 (+) False G128823

Expression Profile