RNA id: AMCG00000820


Basic Information

Item Value
RNA id AMCG00000820
length 6947
RNA type mRNA
GC content 0.49
exon number 10
gene id AMCG00000820
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 4429747 ~ 4464744 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAATCCCAGCAGAATGTAAAACCTGGCGTCCCGGTCGTGAAGTGCCAGAGTCAATTAAGTCTGACAGTTCCCACTCAACTGTACCCgcgcagcagctgcagcagcagcgaACTGTCCCTCTCGAGCGCCTGCAGCGAGTTTTCCAGCGGCTCCTACACGTGGAACGACGGGAAGTCGTGCAGCAGAGTGTCATCGCAGACCTGGGAGAAGAGAGTCAGTATCGGCTCTTCGGCACCCAGCAGCATCTCCAGTCCCGCGGAAGAGCAGCCCCCCACcaggaagaaagaaagtcaCATCCTCGAAGGCCTCAAGAAGCTTCAGAAGAGGAAGCCAATGGAACCATCTTCTCTCATATCGAAATGGGGCTACAAAGACTGTATGAACTCTAATGAGGGGATCTATTCTCCTGGCGTAAAGTGTGTGGGGAGAGGCGTCCCCAAATCCCACACGCCCAGCAAACCCACGGGACTGTGCCCGAATCGCGAGCATGGGAAGAAGTTCACCTACGACTCCGACTCCCACGATGACGCGGATGACGAATCGACCAACGCTCCTCCTCTGCGGCACGAGATTCCCAGCAAGGACTGCCGGACGTACTCCAAGAAGCTGACCCACAGCATCTCGGATAGCCTCTTCAGCTGGGAGCAGCGCGGGAAGGTGGCGACGGGGAATCCCTCTTACTTCAACTCGAGAGAGAGGCCGGAGAAACTCACGAGCTTCATCAACGGCTTCCTCTCGGGGGAGAATAGTCGCGCGATCCTCGGCCCGCCCGTGCTGCGGTTGGAAGCGAGCCCCACCGAGATGGACTGCAACCTCCAGCTCTCCGACATTGACGATCTAGAAGTCCTGGAGGAGTTGCGTATCGAGAGCAGCGACGAGAAAAGCACCGCGGTGACCCGACTGGCTGAGAAACAAGGGAGGGAAGCAAAGAGGCTTTCAGGAGaaatagacaaacagacacTGCAATGTGAGAAGGATCAAGGCAGACTTCAGCCACCAGACATCAGGCCAAAgacttttaatttgataaagCAGCATAAGATAGTGAAAAATACGTCGTCTGAAGAATGTATTACTGTGATATTTGATGCGGAAGACGGGGAGCCCATTGAGCTCAGTTCACAGCAGACTGGAGTCGTCTCTGTGACTAGAAATGAGATTTCTGTGAACCAGCAGCAGAGCGTAGCCAGTGCTGAATATACTGAGCTGATACCTCAGGGAAGGTCTAATTGTCAGAAAGGAAGCAATGCAAGGAACTACAGCGTCTTAGAATCCCCAGAAAGCCAAGCCGAGCAACAGCCGGACAATATGGCACATAAAAATGCAATCCTCCCGAGTGCGTGTGCTGACGCGCCTTCTGAAAGACTGCcaacgcactttcccaagccacagaaattaataaaacccTCTTACAATAGTACTCATAAAATTAATCCTGTCTCTCCTATGCACAGTTCTTCCAGTCAGAAGGCAAACCTGACCAAAATACCGAGCCGAGGAAAGGGCTCCCCGCAGAAGGTGTCCAAAGCCTCTGTCAATGACACCAGCAATAACAACGGGACCTCCAGTTCTGCATTTCAGGAGAAGTCACCTTCTTCTCCTCCTGTCAAGCTGTCCAGGTTCATAAAGCCACCGGGTGGCGGTTGTGTCCAGAACCCGAAAGCAGAACCGGGGGTTTCAAAGCTCAATTCGCAACCTCAGCAGAGCTCCAAAATCCCCTGCCGCAATGAGTGGGGAAAGGGCTCTTCCACCACAATGCCGGGCTCCCCTCTGCTACCCCGGCGTCACTTAGAGCCGGTTGACTATGGAGAGCAACCGACGAGAGACAGGCACTGTGACTCCGCGCACACCGAACTCAggtctccctcccctcccccgccGCCGGGCCGCTCGGCTTCCTTGCTTATACGACCAAACTATGAAAATGCACCCCTAGCACTTAAACCTCACCTCCCGGCATCAAATGCTTTAAGAGGAGGCCCTCCCAGTTCTCAGATGCACCTCCACCACCCCTTGCCTCTACCTGATACGCAGCATCCAAACCCTCACAAGAGTCCAGACTCGGCAAGTCTTGATGACGGCCATTGTCCCGAGATGGCACCGCAGAAGCTTGTGGACAACGCCAGTCAGCACCTGCAGAGGCCTCCGGGGACATATCAGACCCCGACAAAAGGGTCGCCCAAACGGGTTCCAGCCAAACTCTACCATCCTTCTCCTGCTCCGGGATGTGTCTCCGATTTCTGTGAAAATGCATCAAAAAGCTCAAAAGTGCACAATTCTCAGAGAGGCTGTTCACTACAGAGCGCCTTCTCCACTAAGAAAGGGCCGTCCTGTGAGAATGGCTTTCCTCTTCTGTATAAAACATCGAGCAGCTTGCCGATATCACTTCAGGGTCACTCACAGACTATTCCTGAAGCTCACGGGGTTCAGACACATCCCTCCCCGGTGACACGGACCTCACCAAGCACTGGTGTCAGCCTTCAGAACTCGGAAGAGAAGGTCTCGAAGACCCGTATCCCCATTGGCCTCAAAGCCTTTGTTAAATCACCGCCATTGCTGAGAAAAAGCTCCACGGTACCAGGAAAGCAGGAGAAAGACAATATCAATTCAGCTTCCAGAGGCACGGTGACATCAAGCAACTTTAACAACTGTGATGCATCACAGGGAAGCAGGCACTTTGAAATGGTGAGCGCAAAGTCTGACCAGGAGATCAAGACCGACATGCTCGGCAGTCCCACGAGCGGAGAAACGCATTCGTTGGCGTTATCTGAAAACGGCGGCCCTTTTTTTGATAAAGGCGATGGTGAGAGTAGACTGTTCAAGAGGTCGGTTTCGGTCACTAATAAAACCCACCTGAAGCCAGCGCTGGGGATGAATGGAGCCAAAGCTCGCAGCCAGAGCTTCAGTACACATTCTGGGGAGAAACCATGCACCAACGTCATGGATGGTCCGGGTAAGATTCGAACGCAGATCATAACAAACACGGCCGAGAGAGGCAACTCCTTGACCAGGCAAAATTCTCTAATCGACGGTTTCCAGCTGAAGCCGGGCAGTGGTCCGTGTGAAAGTCCATCTCACTCTCCGAGAGGGGTCGATTGCTCCTATAACAGACAAGGCTCTCATGGGAGTATGAGCAGCTCAAGCAGCCACCATGGCAGTCCAAGTAAAATAGCCTCTCGGACCACTCCGAAGGGCGACAGCACTAGAAATGCATCTAAGGCTGATGGAAGCAAGTCTCCACCCCAAAAAGAAGCACGTAGTCTACCTCTCGCCGACAGGTTCGGACTTAAAAACTCAAGACAACCTGTTAAAGTTGCGTCACACCCGCAGTTTCATATCGTGACATCGCCCGTCTTTGTCCCGGAGATGTCAGCAGAAGCTGTTGGGAGCAGGTTGCTAAGCCCGAATAAACTTGAGATGATCAGGCCTGTGAAAAACCAGGACAACCCCAGCAAAGCACCAGAAGTACCGGAAAAACTCGTGAGTCCCTCGGTGTCCACGATAGAAGAGAAAGTCATGATGGGCATCCAGGAGAACATGCAGAAAGGCCATGGGCAGGACAAGACGCCAGCTTCCGAAACCAAGCAGAAGACCGGTCCATCGTTGGCCAACTGGTTTGGCTTCCGGAAGAGCAAGCTCCCTGCCCTGAGTGGCAAGAAGGCAGACGCGTCCAAAGCAAAAGACGAGAAGAAGGACCTCAAGATCGGATCAGTATTAGGAGGGAAGCAGGTGAAGGCCGACAAAAAGAAAGATAAGAAGAAAAACGAGCCACAGTCTAAAGACAGTCAAGAGCAGACAAAGAAGTCAGAGAATGGAGATAAACTGGGTTCGATCATTGACCATTGCAATAGCCAGATGGGACAACCAGGGAAGCTGATCCAGTGTTCGACTACATGCATCGGGAAGGAGCAGTTTATGAAGGAGCTACTGAACAGGAGTGTGTCGAAGGGCAACTCCCAGGGCCCGGCTCTGCCCGGCATCTCCATCAACGCCCAGGGAAACTACAAGAGAAACGGCGAAATGAAGGGAGATATGGACATTCACAACGAAAGTGCGAGCAAAATCATGACACAAACGATCAACATTATCACCGATAATGACGAAGAGCCCACGACTGAGTCCACTTGTCAAGACCACATGATAGGGTCAAGCTGCCAGATGAGGACCTTGGACAGTGGGATAGGGACTTTCCCCCTCCCCGACTCCGTCAACAGGCCGACCGGCAGGCATCTGCCCAAGTCCGAATCCAGCCCCGAGAGGGCGCTCAGCGTTTCCCCCGAGCCCGCCGACCATCACCCCCTACCCACGCCGCCGAAAGCCAAAACTGTAGATCGACAAGTGCCTTCTGACTCTGGAGCCGGCCACCATAAGCGCAGCGACATGGGGCATTCCCTCTCGGACTCCACGATGATTGCCACCGATGGATACGTCTTCCAGAGCCAGCTCCCCCTGCCCACCGCCTCAGGCCCGATGAAACTCCGGAGAGCGAGTGAACGGGAACACGGCTCGGTCTCGGCCCAGACTCCTGGTGACTGCGAGAACCGAGCGGAGGATCTCAAGAACCACAAGGAGCCGCACGGCCTGCACGCGGACAGGACGCTACGAGTTTGCACATATccaggcagcagcagtgagagCGAATCCGAATACGAATCGAGTGAGAACAGCTCTTGTCGTGACACGCTGTCGGACCCCATGAAGAACAGCAGGCAAGTTGCCCCAGATGAGCCAGTGGTAAAGAAGAGCATTGTGGCAAACCCCATGTCCATTATGGATTTCTACCACGTCCACTTTGGGGAGGAAGCGCACAAAGACGTCTCGCAGTACGGTTTTATGCACAAGGACTCGAGCACCGAGGGGAAGACTGAGGAAAGCCCAAATAAAACTAAACAAGCGGAAGAGAAGCAGGAAGAACCCAAGATGTCCAGCTTCTCTAAAATCTCCCTGGAGTCCCTGAACAAAATCAACAGCAACAGTGGGATCTTCGCGGAGAAGGACAGGAAGACAGGGAACAAGGCCGAGGGGCAGCCGGAGGGCCGTGGCGGGACGGAGGAAGCCTCTTCGAGCTGCTCCGATAAGCCCGGCCTGGAGTCACTCAGCGATTCGTTGTACGACAGCTTCTCCTCGTGCGCCAGTCAGGGCTCGAACGAGGTATAGAAGATATAGCGACTCGGAGATGCCGACCGAGCACCGATGTCCCTACGGAGCACTTAAATTAGAAGTCATAAAAAGGACAGAAGAATCCAGGGTTGCAGGATCGAAGGCACGATAAGGACAGAGAGGCCCGTTTTCAATGTACGGACAGCAATACTGTTAGACTGCGGTTCATGGCAGAGTAACATTGAGAGAGAAAGTAATAAGTTGCAACATTGCACTGttataaatactgtacaaaGATGTGTGTAAAGTTAAAGCGAAATATATTTGTAGCAAAAggaataaaagcaatacattttatgtCGGGTTTACAGATCTGTCGTAAAGTATAAATGATTCAAAGATATCGACTGCGCCGTTTGTTAGCTTATCagtaaattagttttaaattatacatatagaTACGGTCTGACAAAGAATGGGATTTGACAATATAGGGAAACCTCTGTGTtgttgtggaaaacaaaatgcatttgacagGAAGATGGAACGAGTAGAATTACActctttagttttatttatgtatctgtttatatatatatgttatgcaCATTTGTACAGGGTGCAATCAAGAGGACAGTATCGGTACAGATCAAAGACAGgactgcttttaaataaattaatagaaatgaCTACAAGCTGCTGTTATTTGTAAACTGGAGTTTATTTTCACATCGAAGGCCAGGTGGTTTCCAAGATTGTTCAATggtaaaaaaagataaagaaaaaaacattcctttGAACATGAAATCAAAGCAGAGATACCACCCTCTTTTATCGtggaaaacagaataaaagaatgtgaaaaaagGCTTCCAGCCCTGAACGATTGTTGACAGTTGTTGTTACATATTGCTGTCATCCAAAAGTATTAAACCAGGCTggaataaacagaaatgtatgtgCAGCTAAACTGGGGAATAacatcacaaataaatatatatagtcataTAAGTCTAACTAGcatgcatttcttaaaataatcaaacacaaaaaataagcaCTTGTTTTCCACAACAACCGTGCAGGATTTCAAACCGAGTTCCTCCACTCTTTCTTGATTGTTAACTTCATTTGTACGTCTGTTGCGTATGTAAACAGTGCTCTTTGAAGTGTTGTTTGTAGACGATTCTGCTGCGAGATCAGACACCGGCACAACATAGAGATcttgaaatgttatttaaaagaaacGGTTTGCAAACTtgatcattttctttctttttgtatggttttgtgtctttttttttttttttacagaggaACCTCAAAGTGTCTGTAGAGATTGTAGGcataaaaacagatattttattgatgttCTGTAAAATCTACTGGCACAACCTTCATCACCTTAACACTGTGTTGTGGGGGATTTGAAAAGTCCGTGTCTATACGGATCACTTTAACTGGGGCTAACAGATGGGAAGCAAACTGTATTTCTCGTTTCATGTTTTTCTATGAAACTTTGTTCATATGTAAGGAGAGAGTCTATTTCAAAAGACAACTGTATTTTTCTAGCTGTGATGTATTTATACCTACTTTTGTAAATGGAGCTGTAAAgtagtgtatttgtattatttctgattTTTCCATACTTGTTAAGGTTTAAGATACAATGGTACCAACAGTGTTACTTTGGTAATAAtttgtgcaatttttttttgctgttacaTTAGAACTTTATGCCATATGTTATGTAATGATGTTGTCAGAGATACGATTATTTCaaattttttcagtttttaaaaaaaccATTGATTACACTTCATAAAATGAGATGCTAGTTTAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158437 lncRNA downstream 184706 4244729 ~ 4245041 (-) True G126369
TU158357 lncRNA downstream 752820 3674281 ~ 3676927 (-) True G126296
TU158314 lncRNA downstream 773186 3553047 ~ 3656561 (-) True AMCG00000804
TU158325 lncRNA downstream 876770 3550840 ~ 3552977 (-) True G126275
TU158101 lncRNA downstream 1293834 3133876 ~ 3135913 (-) False AMCG00000777
TU158504 lncRNA upstream 172623 4637367 ~ 4637640 (-) True G126428
TU158505 lncRNA upstream 173214 4637958 ~ 4638285 (-) True G126429
TU158506 lncRNA upstream 176314 4641058 ~ 4641341 (-) True G126430
TU158508 lncRNA upstream 177936 4642680 ~ 4643466 (-) True G126432
TU158524 lncRNA upstream 238395 4703139 ~ 4708851 (-) True G126445
AMCG00000821 mRNA downstream 25606 4401739 ~ 4404141 (-) True AMCG00000821
AMCG00000817 mRNA downstream 42027 4380615 ~ 4387720 (-) True AMCG00000817
AMCG00000818 mRNA downstream 103170 4317018 ~ 4326577 (-) True AMCG00000818
AMCG00000813 mRNA downstream 340851 4067944 ~ 4088896 (-) True AMCG00000813
AMCG00000810 mRNA downstream 488432 3934797 ~ 3941315 (-) True AMCG00000810
AMCG00000825 mRNA upstream 182217 4646961 ~ 4651113 (-) True AMCG00000825
AMCG00000824 mRNA upstream 204524 4669268 ~ 4683641 (-) True AMCG00000824
AMCG00000836 mRNA upstream 399456 4864200 ~ 4938788 (-) True AMCG00000836
AMCG00000835 mRNA upstream 479473 4944217 ~ 4954174 (-) True AMCG00000835
AMCG00000838 mRNA upstream 492395 4957139 ~ 4982651 (-) True AMCG00000838
TU158313 other downstream 773186 3652657 ~ 3656561 (-) False AMCG00000804
TU158094 other downstream 1280495 3131714 ~ 3149252 (-) True G126096
TU158093 other downstream 1295930 3131714 ~ 3133817 (-) False G126096
TU158081 other downstream 1379796 3044257 ~ 3049951 (-) True AMCG00000771
TU158078 other downstream 1387783 3036931 ~ 3041964 (-) True G126089
TU158503 other upstream 171352 4636096 ~ 4636516 (-) True G126427
TU158856 other upstream 1107961 5572705 ~ 5573027 (-) True G126700
TU159187 other upstream 2247214 6711958 ~ 6733817 (-) False AMCG00000888
TU159288 other upstream 3165171 7629915 ~ 7645722 (-) True G127039
TU159607 other upstream 4954252 9418996 ~ 9419325 (-) True G127292

Expression Profile