RNA id: AMCG00000821


Basic Information

Item Value
RNA id AMCG00000821
length 267
RNA type mRNA
GC content 0.57
exon number 2
gene id AMCG00000821
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 4401739 ~ 4404141 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACTGCAGTGAAAGAGGAACTCGGATTGCTTGGTACACAGTATCGGAAGTCCTGTGCCTCTTCCGCGGCCTGCCTTATTGCCTCGTCAGGCTATCAGCAGTTCTGCACGGGGAAACTGAACTCCGTCTGCATCAGCTGCTGCAACACCCCGCTGTGCAACGGGCCCAAGCAGAAAAAGAGGCCCAACTCATCGGTGGCACCCGCCAGCCAGCTGCACGGCTCCCTCTTGTTGTTGTCTCTTCTACTAGCCAACCTGCTGACATAG

Function

GO: NA

KEGG:

id description
ko04913 Ovarian steroidogenesis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158437 lncRNA downstream 156698 4244729 ~ 4245041 (-) True G126369
TU158357 lncRNA downstream 724812 3674281 ~ 3676927 (-) True G126296
TU158314 lncRNA downstream 745178 3553047 ~ 3656561 (-) True AMCG00000804
TU158325 lncRNA downstream 848762 3550840 ~ 3552977 (-) True G126275
TU158101 lncRNA downstream 1265826 3133876 ~ 3135913 (-) False AMCG00000777
TU158504 lncRNA upstream 233226 4637367 ~ 4637640 (-) True G126428
TU158505 lncRNA upstream 233817 4637958 ~ 4638285 (-) True G126429
TU158506 lncRNA upstream 236917 4641058 ~ 4641341 (-) True G126430
TU158508 lncRNA upstream 238539 4642680 ~ 4643466 (-) True G126432
TU158524 lncRNA upstream 298998 4703139 ~ 4708851 (-) True G126445
AMCG00000817 mRNA downstream 14019 4380615 ~ 4387720 (-) True AMCG00000817
AMCG00000818 mRNA downstream 75162 4317018 ~ 4326577 (-) True AMCG00000818
AMCG00000813 mRNA downstream 312843 4067944 ~ 4088896 (-) True AMCG00000813
AMCG00000810 mRNA downstream 460424 3934797 ~ 3941315 (-) True AMCG00000810
AMCG00000809 mRNA downstream 468439 3930277 ~ 3933300 (-) True AMCG00000809
AMCG00000820 mRNA upstream 25606 4429747 ~ 4464744 (-) True AMCG00000820
AMCG00000825 mRNA upstream 242820 4646961 ~ 4651113 (-) True AMCG00000825
AMCG00000824 mRNA upstream 265127 4669268 ~ 4683641 (-) True AMCG00000824
AMCG00000836 mRNA upstream 460059 4864200 ~ 4938788 (-) True AMCG00000836
AMCG00000835 mRNA upstream 540076 4944217 ~ 4954174 (-) True AMCG00000835
TU158313 other downstream 745178 3652657 ~ 3656561 (-) False AMCG00000804
TU158094 other downstream 1252487 3131714 ~ 3149252 (-) True G126096
TU158093 other downstream 1267922 3131714 ~ 3133817 (-) False G126096
TU158081 other downstream 1351788 3044257 ~ 3049951 (-) True AMCG00000771
TU158078 other downstream 1359775 3036931 ~ 3041964 (-) True G126089
TU158503 other upstream 231955 4636096 ~ 4636516 (-) True G126427
TU158856 other upstream 1168564 5572705 ~ 5573027 (-) True G126700
TU159187 other upstream 2307817 6711958 ~ 6733817 (-) False AMCG00000888
TU159288 other upstream 3225774 7629915 ~ 7645722 (-) True G127039
TU159607 other upstream 5014855 9418996 ~ 9419325 (-) True G127292

Expression Profile