RNA id: AMCG00000823


Basic Information

Item Value
RNA id AMCG00000823
length 1881
RNA type mRNA
GC content 0.57
exon number 15
gene id AMCG00000823
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 4636292 ~ 4642779 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGGCCGGGCCGAGCCGCTGCTGGGGGCTGCGGTGGGCTTTGGGACGGATCTGCATCTTGTCTCTGTTGCTTCCGCTCGCCAGCTGTCACACCTGTAAGCACCGTGTGCCCGACTCGTCCGAGGATAAGCTCTTTCCTCAAGCAATTGATTACTTACAGAAGGCATTTCAAGTTCGGAAGCAGAGCGGACCAATTTTGCTAAGCAGACAATGTTCGACCAATCAGTATCTGCGGAAGAAAGATGACCCCCACAGATACTGCCAGGGAGCGTGTGCAGAGACCACCCGTTGCGGACCCGTCGCTGTGCCAGAAGACCACTTGCAGCAATGCAAGATGTGCAACGCGACGGGGAAGCCATGTGGTGCTGCCGGACCACCCGACGGGCCGGGGATCCTGGAGGCCGACTTCCTGCTGTACGTGAGCGCGCTGACGACGAAGCGCTGCGGGCAGGAGAACATCGTAGCGTACGCCGCCTACTGCCAGCTGGAGGCCGAGGTGGACAGGCCTATAGCGGGATACGCAAACCTCTGCCCAGCCATGATCTCGACACATCCTCAGGACTTTATCGGCATGCTGTCCACTGTGAAACACGAAATCATTCATGCACTGGGTTTCTCAGCTGGGCTTTTTGCGTTTTATCACGATGATGATGGGAAGCCCCTGACACCGAGATATGCAAGTGGATTACCGCCATTCAACGAGAGTCTGGGCCTGTACCAGTGGAGTGAGAAGATCATACGGAGAGCCACCAGGCTGTGGGACATCCGTGGCGACAGGATGCTAAGGCATGAAGTGTCCCTTCTGGTCACGCCGCGTGTGGTTGAAGAGGCAAGGAGGCACTTCGACTGTCCGATCCTGGAAGGCATGGAGCTCGAGAACCAGGGCGGGCTGGGAACCGAGCTCAATCACTGGGAGAAGAGGCTGCTAGAGAACGAAGCCATGACTGGATCTCACACGCAGAACAGAGTGTTTTCCAGGATTACGTTGGCGATAATGGAAGACACGGGGTGGTACACGGCCAACTACAGCGTGGCAGAGAGGCTCGACTGGGGCAGAGGGATGGGCTGTGACTTTGTGATGAAGAGTTGCAGGTTCTGGATTGACAAGCAGCGACAACTGAATCAGACTGTGGCGCCATACTGTGACGCTCTGAGGAGTACACCACTGAAGCTGACCTGCCGGCAGGACCAGATGGCCGTGGCAGTGTGCAATTTACAGAAATACCCCAAGATTATCCCGTTGGAGTATCAGTACTTTGATCGCATCCCTGACGTACCTGTGCCGGAGTTGCCGTATTACGGTGGCTCTGTGGAGATAGCGGACTACTGCCCTTTCAGCCAGGAGTTCAGCTGGCATCTCAGTGGAGAATATCAGCGCAGCTCGGACTGCCGGCTCTCAGAAAACCAGCCAGATATGTCCAGAAATTACGGTGCCGAGGAGTATGGCCCCCAGTCAGTGTGTCTTCTCCAGAAGTCTGCTTTTGTCATGGCGCAGTGCATCAGGAGTATGGTCTATCCCGACTGGGGGAGCGGCTGCTATAAGGTAACGCCAGACAAAGACGAGGGGGTCTCCTGTTCTATCCAAGGGCTGACCGTCTGGGTGCAGGGCCACGCGTTTCTGTGCAGCCGTGCGGGTCAGGTGCTGCGCGTCAATGTCGCGGTGAGAGGCTGGGTGTACACCGGGACCCTCCTCTGCCCATCTTGCTCCGACTTCTGCAGCATGTGCCCCCCCGATCGAGACCCTCCTTTCTTCAACAAGTCCAGAAGCGTTCCCATAgatccgtgctccagctcatccagctTGGTGGTGACTCTGTGGCTGCTTCTGGTGAACCTCATCCCCCTCATCGCTGGGTTCTTCCTGTGCGCGTGGAACTGA

Function

GO: NA

KEGG:

id description
K13539 LMLN; leishmanolysin-like peptidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158436 lncRNA upstream 391256 4244732 ~ 4245036 (+) True G126368
TU158362 lncRNA upstream 906236 3725920 ~ 3730056 (+) True G126301
TU158294 lncRNA upstream 963116 3670802 ~ 3673176 (+) True G126248
TU158279 lncRNA upstream 979711 3652673 ~ 3656581 (+) True G126240
TU158251 lncRNA upstream 1077868 3555566 ~ 3558424 (+) True G126215
TU158587 lncRNA downstream 234088 4876867 ~ 4880503 (+) True G126500
TU158588 lncRNA downstream 234088 4876867 ~ 4877646 (+) False G126500
TU158693 lncRNA downstream 478266 5121045 ~ 5124330 (+) True G126568
TU158694 lncRNA downstream 478425 5121204 ~ 5123938 (+) False G126568
TU158695 lncRNA downstream 483780 5126559 ~ 5126808 (+) True G126569
AMCG00000819 mRNA upstream 237233 4398586 ~ 4399059 (+) True AMCG00000819
AMCG00000815 mRNA upstream 269346 4351378 ~ 4366946 (+) True AMCG00000815
AMCG00000814 mRNA upstream 286995 4330368 ~ 4349297 (+) True AMCG00000814
AMCG00000816 mRNA upstream 329941 4299531 ~ 4306351 (+) True AMCG00000816
AMCG00000812 mRNA upstream 588614 4002126 ~ 4047678 (+) True AMCG00000812
AMCG00000822 mRNA downstream 9203 4651982 ~ 4667416 (+) True AMCG00000822
AMCG00000829 mRNA downstream 41916 4684695 ~ 4703265 (+) True AMCG00000829
AMCG00000830 mRNA downstream 65319 4708098 ~ 4708621 (+) True AMCG00000830
AMCG00000828 mRNA downstream 67852 4710631 ~ 4720547 (+) True AMCG00000828
AMCG00000827 mRNA downstream 85797 4728576 ~ 4751344 (+) True AMCG00000827
TU157662 other upstream 2940045 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 3035653 1599696 ~ 1600639 (+) False AMCG00000723
TU157377 other upstream 4294521 339640 ~ 341771 (+) False G125561
TU159397 other downstream 3974420 8617199 ~ 8620195 (+) True G127134
TU159756 other downstream 5505078 10147857 ~ 10154187 (+) False AMCG00000949
TU160309 other downstream 7356885 11999664 ~ 12011425 (+) True AMCG00001002
TU161370 other downstream 10527132 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 10766333 15409112 ~ 15420880 (+) False G128823

Expression Profile