RNA id: AMCG00000824


Basic Information

Item Value
RNA id AMCG00000824
length 3752
RNA type mRNA
GC content 0.47
exon number 7
gene id AMCG00000824
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 4669268 ~ 4683641 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCGCATGCAAGCAGGGAAAGGGCTGGACGTTTTGATTTTTTGCTATTGTTACTATCCGGAGAATGGGGTACTGCTGGACGTTCACAGCTGCAACATCTGTCCTGATCCATTCTTTCTatgttCACGTTCTTGCCTTTACACACATCAACAGCAACTTCTGTAAATGGTGCGACTATTCCAGACCACAGTGTGAGGAGAATATCTGCTCCACGAACTGCTCCATCGGCTCGTTCTGTTCCCAGGCGGACGAGATCTGTGTGGCCATAtgGAGGCAGGACAACGGGAACGTGAGTGTCCGGACGCTGTGCCACCATCCCCAGCACGCGCTAGAGGACATCGTGCTGTCCAATTACTCGAGCAGCGAGTGCCGGATGGTGCAGCAGTCCTCTGATGAAGGCACTGTGTACATCTGCGCCTGTGTGAATGAGCATGAGTGCAACGACAAGCTGATATTTGAAAAGGGCTTCAACGGGTACTCGAGGTTACAAAGCAAGGATATCATTCCTGTGGTAGTGATCAGCCTGCTCCCACCTCTCTTGGTTGCCATCATAGCCACCATGGCATTTTACCTTTACCGCACCCGGCAACAGAACAAACATCCCAAAGACTGGTCTCCCAAACGTACCCATTACCAGTCCCTGGACATCCCAGAGAGCAGGCACAATGGGGAGTACAATGGGAAGCTGGGAGGCATCATTGACGACGGCCACTCGGATATCTCCTCCACGTGCGCCAACAACATCAACCACAACACGGAGCTGCTGCCCATTGAGCTGGAAGCGATGGTGGGAAAAGGCCGCTTTGCCGAGGTCTGGAGGGCCAGGCTGAACCACAACGCCTCGGGCCAGTACGAGACGGTGGCCGTCAAGATTTTCCCCGCGGTGGAGTACTCCTCCTGGAAGAATGAGCGCAAGATCTTCTCGGACATCAACCTCAAACACGAGAGCGTGCTGCAGTTCCTCACGGCCGAGGAGAGGGGCAGCGGGGTACAGAAGCAATACTGGCTCATCACGGCCTACCACAGCCTGGGAAACCTGCAGGAATACCTGACCAATCACGTGCTCAGCTGGACAGAGCTGCATCTGATGGCCGGGTCAATGGTTCGAGGTGTGGCCCACCTCCACAGTGACTACACGACCTGCGGGGTGCCCAAGATCCCCATCGCCCACCGCGACCTCAAGAGCACCAACATCGTGGTGAAGAACAAGACAGAGTGCGTTCTGTGTGACTTCGGGCTGGCGCTCAGACTGGATCTCTCTCTCACGGTGGATGACTTTGCCAACAGTGGGCAGGTCGGTACTGCTCGCTACATGGCACCAGAGGTCCTAGAGTCTCGTGTCAACCTAGAGGATCTGGAGTCCTTCAAACAGATGGACGTGTACTCCATGGCCCTGGTCTTATGGGAAATGTCATCGAGGTGTGATGTCATAGGGGAGGTGAAGAGCTATGAGCCGGCGTTCGGCTCCAAGGTCTGCGAGCAGCCGTGTGTGGAGAGCATGAGGGACCTGGTTCTCCGGGATCGGGGCCGGCCGGACATTCCCAGCAACTGGCAGATACATCAGGGCATGAAGTTCCTGTGTGCGACTATCCAGGAGTGCTGGGACCACGACCCCGAGGCCCGACTCACGGCCCACTGCGTGCAGGAGCGCTTCTCTGCGATGGGGCAGGAGCAGAGCGAGGACAtcctgaacaacaacaacagccaccCCCGCTTCCCCGCGGGCCCCGAGCAGAGGAAACCAGCGAGTAGCGACGTCCAGAAACCCTCGGCCCTTGACGGGATTGCGACTGTGCAGCTTGTGACCGAGGTGTAGAGGCCAGCGAAGAAATCGGAGCGCTGTGGGGCTCGTTCCCAGGATGTGCACTTCTGTGTAGTCAGACCTCAGGAGTGGTTTAAACTTTGAGATATCCTGGACCCGTTGGATGGAGCAGGGCTGAAGATGTGGACAAGATACTGCTTCACGAAAAAAAAAGAGCTGGTCTCTTTTTATGATGTATCTCAGATATTCTATCGCTGTGCATTTATGAACATTTTATATCACTGAAGACTTTTTCATTGCTCTCAGATACAGAAAGagtgggatttttatttttaaagagatgtGATCATTGTTCTGCATGATACGATTCTTTAAAGCAGAATTTAACCACTCTAACCGAAGCCCCCTTTGAagtaaacagaacaaaagcagtttaaaaaggATATTGcatcaatatattaaatgtgaaatgtaccAATTGAGgctttacttttttattacttGTAATCTTATAAAAGACCTATCATAACTATAGTATAAGACCCAGTATAACTATAGTAAAAGACCCATTATAACGAGCTAGATTTCTCTTTGCCTCACATGAACACACAGTTTCCCAGGCAGCTGTGTGGTCTGGCCTGTCTTGGCTCTGGCCTGAAGCACTCCCAAGAATAGAAAGACAAAATATGGCTATGGTGTCTTCTTTGGATATTGAGCTTGATTAATCCCGGgctcttgcaaaaaaaaaaaaaaggcaaatttgTCAAAGAAACTACAATAAACAAAAGCCACATCATCTCAAGACGAAACCAAAGGAATAAACAGCTGCTTCTCACATTGTTTTTAACCAATAGTTCCACGTCTCTGCTGAAACAATGCCTGCTTTTGAAATCTAACACATTCACTTGATCGGTCTTTTCATTTGTAACCGAggagttttgttgtttttcagggtCATTTGTCTTAACTTGGTGCGTTTGATTCCGAAGGTCTGCAGTCTTTTACGCGCCTGTGTGCTCTACAGTGTTTATAGCACTAGAACATATCATATGGCcatgtaaaaatatacagtcCATCCCCCTGTATAAACAAAGTTTAACTTCCTAAAGCAAAGCGACCATTTTCTACATGTGTGGGTCGTCACCTCTGAATTGGGTTTCTTGTTATGGAAGCCCTTTATAAAGACTATAGATTTGTTTTGGTCGAACAATTCTAAGGATAGCATGAAGGAAAGATCTGGAGATGGATAGCATTTAAAagatgattttaattttgttccaCGGTCTTTTAAATTGAGTCTGTATGATCCGCAGGTGATATAGTTTGAAATCAACTACATTGTAGTAGAATTGAGGAATGAGAAACGCACATTGCAattcaacagaaaataactAGACCGGAttaaattctgaaatgaaaaactcaacaacaaaaaaaaacatttacaagaaaAGGCTTTTGGTCTGTACAGCACATGCAAGTTACATTTGACTGATCTCTGCCAAAGCGCTGTCTTTTATAGTAGCCATCACGCTGATTTAAATCATAAAGGCATTAGTTGGGCCCGCGTTAATGCAGCTCTTTAGATATCGCGCTGTTACCATCCGGAAAACAGACCTCTGTGTGTAACGCAATTTCACTCTGCTAGTCATTTGAAAAGTCATGTGATTGATGCTGCTTCCTAACTGGCTTTGAGTCACAAAAAACAGGGCCCTGTAATTCAGATTTACTATCGGAAGGTTAATAAATTAGCCCTATTAAACGTCGGTTAAAATCAGGTCAAGTCACATATTTACTCTCTTATTAGCCAATAAGCATGGCTGAATAGTTACTGattggcatatatatatataccttgtttttttccccctcaaatGCCCTTTAGTGTGGACAATATAAGCTGATTTATGAATGGCATAATCATAATGGAtaattcatcatcatcatcaatctTTAATATTTGTCcatacctatatatatacacacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158508 lncRNA downstream 25802 4642680 ~ 4643466 (-) True G126432
TU158506 lncRNA downstream 27927 4641058 ~ 4641341 (-) True G126430
TU158505 lncRNA downstream 30983 4637958 ~ 4638285 (-) True G126429
TU158504 lncRNA downstream 31628 4637367 ~ 4637640 (-) True G126428
TU158437 lncRNA downstream 424227 4244729 ~ 4245041 (-) True G126369
TU158524 lncRNA upstream 19498 4703139 ~ 4708851 (-) True G126445
TU158563 lncRNA upstream 89940 4773581 ~ 4777784 (-) True G126476
TU158562 lncRNA upstream 91207 4774848 ~ 4777784 (-) False G126476
TU158667 lncRNA upstream 273497 4957138 ~ 4962530 (-) False AMCG00000838
TU158674 lncRNA upstream 330227 5013868 ~ 5034697 (-) True G126554
AMCG00000825 mRNA downstream 18155 4646961 ~ 4651113 (-) True AMCG00000825
AMCG00000820 mRNA downstream 204524 4429747 ~ 4464744 (-) True AMCG00000820
AMCG00000821 mRNA downstream 265127 4401739 ~ 4404141 (-) True AMCG00000821
AMCG00000817 mRNA downstream 281548 4380615 ~ 4387720 (-) True AMCG00000817
AMCG00000818 mRNA downstream 342691 4317018 ~ 4326577 (-) True AMCG00000818
AMCG00000836 mRNA upstream 180559 4864200 ~ 4938788 (-) True AMCG00000836
AMCG00000835 mRNA upstream 260576 4944217 ~ 4954174 (-) True AMCG00000835
AMCG00000838 mRNA upstream 273498 4957139 ~ 4982651 (-) True AMCG00000838
AMCG00000839 mRNA upstream 330728 5014369 ~ 5024891 (-) True AMCG00000839
AMCG00000842 mRNA upstream 437466 5121107 ~ 5132844 (-) True AMCG00000842
TU158503 other downstream 32752 4636096 ~ 4636516 (-) True G126427
TU158313 other downstream 1012707 3652657 ~ 3656561 (-) False AMCG00000804
TU158094 other downstream 1520016 3131714 ~ 3149252 (-) True G126096
TU158093 other downstream 1535451 3131714 ~ 3133817 (-) False G126096
TU158081 other downstream 1619317 3044257 ~ 3049951 (-) True AMCG00000771
TU158856 other upstream 889064 5572705 ~ 5573027 (-) True G126700
TU159187 other upstream 2028317 6711958 ~ 6733817 (-) False AMCG00000888
TU159288 other upstream 2946274 7629915 ~ 7645722 (-) True G127039
TU159607 other upstream 4735355 9418996 ~ 9419325 (-) True G127292
TU159787 other upstream 5591046 10274687 ~ 10278211 (-) True G127443

Expression Profile