RNA id: AMCG00000826


Basic Information

Item Value
RNA id AMCG00000826
length 4199
RNA type mRNA
GC content 0.48
exon number 13
gene id AMCG00000826
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 4752867 ~ 4772009 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCGCGCTGTGAGCCCCTCCGCAGGATTACTTATCCGGCTGCATCTCCGTCGCCTTCCTCCCTTCTGCAGCATCATGGCAACGTGCACTTCAGTGCTACTGCGCAGCGCTCCTCTGTGCGTGCTGCTGCTGGGTCTTTTTAAACCTCTCCAGGCTGGATCCTATACCGACACCGCGATGGAGACGGACAGCTTCACCCCCAACGGGACTGGCTGGGGAGAGACCACGGAGCTGCCCGCCGAGGTCGTGAGCTCCAGCACAGCCGCCGAGCCGGGCTGGGGAGAGTCTGCGTCTGCCCGGGAAAGCGCGTCCCTCTCCGGCGTCGCGCAGGAGCAGCAGCCGCTGGCAGGATCCCGCGCCGccaCAGAATACAGCCCACAGACTGGCAccctgacagacacagagagctggAATTCCCcctctcagacagacagcacttACATCTCCTCCACGTTCACAAGAGCTGGAGAGAGGACTTTATTGTCTGTAACTACAGATAGCACTTCCTCCTCAGAAGCAAGCCAGAACCAAACCCAAACCTACACTATGGGACAATCGGACCAGAGCAGCAGCGAAGGACGATCAACGGCCCAGTCCCAGGTCACCTCCACTGGGTCAGGGCGCACAGAAGGAAGCACGGGGACAGATCGTATCGGGTCAGGGCGCACAGAAGGAAGCACGGGGACACATCAGCTCATGTTGGGGCGCACAGACGGAACCACAGGGACAAATCAGCTCGGGTCGGGGAGCACAGACGGAACCACAGGGACAAATCAGCTCGCCTCCAACACCTCAGGGAGCGAGTTCACTAGCTCGGGCTCTCCGAATGTAACTGGAGGGTCCTTTGATGAGACATCAGACAGTTCTACTAAGGTCACATCACCTTTCAGTTCTTCTCACAACTCCACGGAATCGATGAATTCCACCGGTACGTTTGAAGAGACCTCTTCCTCTTTGGAAACCACGTCCAGAACCCCATCTCCTTCATTGCCACCTTTTTCGTCTTATGACCCTGGTGTCACCAACAGCTCCCAGGCAGGCACGGAGCACTCTGTGACTTCAGGAACCAACACTAGTATGACCACGGAATCTTCTACCGGGCCTTTATTAACCGGCACAGATGACACCACAGAACCAATCCAGCCACAAACAGTACTGTCCGTGAATGATACTGATGAGACTGTGGCCACTGACCCGCCGGTGCAGCCCGACACCGAGACCACGGTGGCTGATTCTGGCGATGAAATCGGCTCTTCCAGCTCTACTGTCACCAACAGCTCTGGTGGGGAACTGACTACTTCTGAAACGCAAAAGATGGCAGAAACGACAGAGGTCCTCACCACAACACCCAGCAGTACCACCCAAAGGACACCGTTAAACAAAACCCAGCTAGTTACCCCTCCGCCCCCTGTAACGACGCATTTATATGTACCGAGCACAACAGAGGAGTCTCCAAATGAACACATCACGTCCTCGGCCACCCATACCACAATAAAACCCCAGACAACCAACGCATCGTCTCAGCAACCCTCGACGTCCAGGACCGAGGGGATGCACACCCAGAGTTCCTCGGGGACTAGCCTTTCTCCCACCGATATCACGACCTTAGTGTTAGAAACAAGTACCGCCACCCCGGGGAAAACCTCGGGAACCAGTGCCCACACAACCGCGTCTTACAGGACTCCGGTGCCAAGAAGGACGACTGCCACCTTGCCCGTCACTGAAAAGCCCACTGAGAAAGCAACAACGGCAGCCCAAGTTACAAGTACAACGAAAATGATAACGACCACAGTCGCGTCAGTGAACTTGTGTAAACCCAATCCTTGTTTAAATGGCGGCAAATGTGCCCTTGAGCATGGCACAGGACAGCGCCACTGTATCTGTACCTCCTCGTGGAAAGGAGACGTTTGCAGTGAAGATGTGGATGAGTGTGGTCAGACCAGTCCCTGCCCCGCGGGCTCAATGTGCGTCAACACCCACGGGTCATTCACCTGCGAATGCGCTCTGGGGTATCAGCTGGAAAAGGGAAGGACGTGCGCCCTTGTGAAGACATTCCTGGGCACTTTTAAAGGTCAAAACATGCAAAAGAACATGAATACCCATGAAATACAGCGAGAAATAATACTAATGctgAATGCATCACTTTCACACCTGAGGGGCTACTCTAAATCTACTGTACATCTGAACAAAAGTGGGAATGGTGAGGTCAATATTTCTGCAGTCAATATCTTCTCCATCAATGCGAATGTGACCCACGTGGATGTGCACGGACACATAGACGAATACATGAGGAACTGCGTCCCCGCGAGAACCGGCTGTGGGCACAGGCTTTGGCAATACCTGTCCTATGAAGATCTGAGTTTATGTGCCAGGATTCATCCCCAGTGTGACACTAACAGGTCCACATGTACGGACACCACTGGAATTGCGGTCTGTCAGTGCAAGGCAGgctatttcaaatacaaaccGGACGTCTCATTATGTGGAGCATGTGATGATGGTTTTAAACTGGAGAACGGCACTTGTGTAAGCTGTCCCTTTGGGTTTGGAGGATTCAACTGTGGGAATTttTACAAACTCATCACTGTGGTTGTGTCTTCTGCCGGAGGCGGTTTGCTGTTGGTTCTGCTCGTTGCTCTGATAGTGACCTGCTGCAGGAAGGACAAAAACGACATCAGTAAACTAATCTTCAAAAGCGGGGAGTTTCAGATGTCTCCGTATGCCGAGTATCCCAAGAGCAACAGGATCTCCGTGGAGTGGGGCAGAGAGACCATTGAGATGCAGGAGAACGGGAGCACCAAGAACCTCCTTCAGATGACGGACATATATTATTCACCCGCTCTCAGAAATCATGAGCTGGAAAGAAATGGCCTCTACCCGTACTCTGGTTTGCCGGGCTCTCGGCATTCTTGTATCTACCCGGGACAATACAACCCCTCTTTCATAAGCGATGACACACGGAGGAGAGACTACTTTTAACCAAAGCAATGTTGGCAGCGCCTGTTGAATGAGCGATGCCTACAGCAGGCTGGCCAGTTGTGTACCGACTGAAAACCAGCAACGTACTGTGAAAAAGCAATGTAAAGGACGATGTTCGATGAAAAGGACGTTGAATGTGAAGGCTTACTACTCAAATGTACCTTTGACCAGAGAAAAACCCTCCAAGGGGAACCTAAGTGGAGTGTGGAAATAACTCCCCTGCAATAACAAATCAAGGGACCGTCTTCCTCAGTACAGTTAACGTCTTTGTCCCAATTCTTTGgactctttgtttgtttctgtcaaaGTTGCACGCGTTCTACACACGTTGTTTTGTaggaatgtgttttatttttcgttgtaaattatgtatttattttttcgttttaattaattgtgtgcATTATTGaaagttatacattttgtttgtttgtttgttttgtgtaaggACAGGATTATCTCTCCATACGATCATAGAAAATGTTTCCATCATAATGAACTGCTACTAATGTCgtataattgaaaaaatactcAAAGTAAATAAGCCCTCAACCACAAACTACTCTTGGGACTGTTTCAAGACACTCCAAAAGACTTGTTATGATGAATAAATTATTAGAGTATAACGTATTAATAGTGTTAATATATGAATGCACCCCATCAAGAAGCTTTCCCTAAAACTGAACTGACCTGGTCTGCATTGTATCTTACAATTATATcatcatgatgtattgatgagGTACTTTGTTATGCTTTCACTTTAAATTCAGAATCCACTGGACAAATTTAAACAGTCACACATGTGGTTGAACTAGTCTGTAAATTCTGTCAATGACAAGCTTAGaggtgaaaatgtattaagcaTGTCTTCATTGCATATTTCATAGATAAGATTGCTACCAAAATCACACTACTACATTTGAAACTATGATAGCAATGTATAGCCGGTCCCATAATTTTCCTCAGTGTTTTACAAGATAACCCATTTGAAAAAcgcttaatttattttctctatttttacCCATCatgcattttcacacacaatttctgttgttttgtaatttgaGATGAAATGCTGTAGCGAccagttatttgtttgtttgtttgatagatttgtgttgttgttttatatttgtgtgttctGGCTCTCTGTTTGTATCCTGTATCATGTTAAAGACCATGCTTATTTAagatttacaatatttgtaacttgtcagata

Function

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0007043 cell-cell junction assembly biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K24472 HEG; protein HEG

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158436 lncRNA upstream 507831 4244732 ~ 4245036 (+) True G126368
TU158362 lncRNA upstream 1022811 3725920 ~ 3730056 (+) True G126301
TU158294 lncRNA upstream 1079691 3670802 ~ 3673176 (+) True G126248
TU158279 lncRNA upstream 1096286 3652673 ~ 3656581 (+) True G126240
TU158251 lncRNA upstream 1194443 3555566 ~ 3558424 (+) True G126215
TU158587 lncRNA downstream 104858 4876867 ~ 4880503 (+) True G126500
TU158588 lncRNA downstream 104858 4876867 ~ 4877646 (+) False G126500
TU158693 lncRNA downstream 349036 5121045 ~ 5124330 (+) True G126568
TU158694 lncRNA downstream 349195 5121204 ~ 5123938 (+) False G126568
TU158695 lncRNA downstream 354550 5126559 ~ 5126808 (+) True G126569
AMCG00000827 mRNA upstream 1523 4728576 ~ 4751344 (+) True AMCG00000827
AMCG00000828 mRNA upstream 32320 4710631 ~ 4720547 (+) True AMCG00000828
AMCG00000830 mRNA upstream 44246 4708098 ~ 4708621 (+) True AMCG00000830
AMCG00000829 mRNA upstream 49602 4684695 ~ 4703265 (+) True AMCG00000829
AMCG00000822 mRNA upstream 85451 4651982 ~ 4667416 (+) True AMCG00000822
AMCG00000833 mRNA downstream 20100 4792109 ~ 4804342 (+) True AMCG00000833
AMCG00000834 mRNA downstream 47196 4819205 ~ 4823894 (+) True AMCG00000834
AMCG00000831 mRNA downstream 61348 4833357 ~ 4838880 (+) True AMCG00000831
AMCG00000832 mRNA downstream 72083 4844092 ~ 4863848 (+) True AMCG00000832
AMCG00000837 mRNA downstream 253286 5025295 ~ 5034697 (+) True AMCG00000837
TU157662 other upstream 3056620 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 3152228 1599696 ~ 1600639 (+) False AMCG00000723
TU157377 other upstream 4411096 339640 ~ 341771 (+) False G125561
TU159397 other downstream 3845190 8617199 ~ 8620195 (+) True G127134
TU159756 other downstream 5375848 10147857 ~ 10154187 (+) False AMCG00000949
TU160309 other downstream 7227655 11999664 ~ 12011425 (+) True AMCG00001002
TU161370 other downstream 10397902 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 10637103 15409112 ~ 15420880 (+) False G128823

Expression Profile