RNA id: AMCG00000833


Basic Information

Item Value
RNA id AMCG00000833
length 1632
RNA type mRNA
GC content 0.53
exon number 9
gene id AMCG00000833
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 4792109 ~ 4804342 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCAGCAGACATGGTGTGGTGTTGGTTGTCAgtgattttgtgatttgtgtgcAAGGTCTCAACATGTGCTCCAGTGGAAGCGCCGCCTCTTGTGAAGAGTGTCTGCTCATCCATCCGGACTGTGCCTGGTGCGCCCAGGAGgAGTTCGGGAGGGCAAGGACTATCACATCCCGGTGCGACTATAGTCCAAACTTGTTGAAGAGGGGCTGCGAGAAGCGCTTCATCGAGAGTCCAAGCAGCAAAATGACCGTGTTGAAGAACCAGCCGCTGAGTTCCAAAGGGTCGGGACCCACCCAGTATGATGTCATTCAAATAATGCCTCAAAAGATTGCCCTGAATCTGCGGCCTGGTGACCAGACCTCGTTTGAAGTGCAGGTTCGGCAGGTGGAGGACTACCCGGTGGATCTGTACTACCTGATGGACCTGTCTCTGTCCATGAAGGACGATCTGGACACTATCCGCAACCTGGGCACCAAGCTGGCGGAGGAGATGAAAAAACTCACCAGCAACTTCCGTCTGGGATTTGGCTCTTTTGTCGACAAGAACATCTCCCCGTTCTCGTACACGGCGCCCAAGTACCAAGACAACCCCTGCAATGGATACAAGCCGTTTCCAAACTGTGTTCCCTCTTTTGGTTTCCGTAATCTTCTCTCCCTGACTGACAAAGTGGACCGCTTCAACGAGGAAGTCCAGAAACAGATGGTTTCTCGAAACCGGGATGCACCTGAAGGGGGATTCGATGCAATCTTGCAGGCTGCAGTGTGTAAGGAAAAGATCGGCTGGCGGAAGGAGGCTTTCCACTTGTTGGTTTTTGCCACAGATGATGTCCCTCACCTTGCCCTGGATGGCAAACTGGGTGGACTGGTCCAGCCCCACGATGGCCAGTGCCACTTAAACGAGAAGAACGAGTACAGCGCCTCGACAAAGATGGATTATCCGTCTCTTGCACTCCTGGGAGaaaaactggcagaaaacaatATCTATCTCATCTTTGCTGTAACAAAGAGGCTGTATATTATTTACAAGAACTTTACAGCATTGATACCGGGTACTACTGTAGAAATTCTCGACAACGACTCCAAGAACATAATACAGCTGATTGTCAATTCCTATAATAACATACGCTCTAAACTGGAACTGACGGTCTGGAATCATCCGGAAGACATCTCCTTGTCTTTCACCGCCACATGCCAAGATGGCAAGCCTCTTCCGGGACTCAGGAAATGTGGGGACCTCAAAATAGGAGACACGGTATCTTTCAACGTATCCGTGGATGCCAGGACTTGCCCTGCActaaacaccaagcacaaattCACCATCAAGCCCGTGGGCTTCAAGGACACCCTGGATGTGACTGTGGACTACACCTGCACCTGTGGCTGCACCGCCGACACCGAGACCAACAGCAGCAAGTGCAGCAGCATCGGCACCTACGAGTGCGGCACCTGCAGGTGCGACCCCGGGTACCTGGGTGCCCGGTGCGAGTGCCAGGAGGGTGAGGCCAGCAACCTGTACCAGACCATGTGCCGCGAGGCCGAGGGGAAGCAGATCTGCAGCGGACGGGGGGAGTGCAGCTGCAACCAGTGCCTCTGCTACGAGAGCGAGTTCGGCAAGATCTACGGCACGTTCTGC

Function

GO:

id name namespace
GO:0007229 integrin-mediated signaling pathway biological_process
GO:0007275 multicellular organism development biological_process
GO:0007155 cell adhesion biological_process
GO:0008305 integrin complex cellular_component

KEGG:

id description
K06588 ITGB5; integrin beta 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158436 lncRNA upstream 547073 4244732 ~ 4245036 (+) True G126368
TU158362 lncRNA upstream 1062053 3725920 ~ 3730056 (+) True G126301
TU158294 lncRNA upstream 1118933 3670802 ~ 3673176 (+) True G126248
TU158279 lncRNA upstream 1135528 3652673 ~ 3656581 (+) True G126240
TU158251 lncRNA upstream 1233685 3555566 ~ 3558424 (+) True G126215
TU158587 lncRNA downstream 72525 4876867 ~ 4880503 (+) True G126500
TU158588 lncRNA downstream 72525 4876867 ~ 4877646 (+) False G126500
TU158693 lncRNA downstream 316703 5121045 ~ 5124330 (+) True G126568
TU158694 lncRNA downstream 316862 5121204 ~ 5123938 (+) False G126568
TU158695 lncRNA downstream 322217 5126559 ~ 5126808 (+) True G126569
AMCG00000826 mRNA upstream 20100 4752867 ~ 4772009 (+) True AMCG00000826
AMCG00000827 mRNA upstream 40765 4728576 ~ 4751344 (+) True AMCG00000827
AMCG00000828 mRNA upstream 71562 4710631 ~ 4720547 (+) True AMCG00000828
AMCG00000830 mRNA upstream 83488 4708098 ~ 4708621 (+) True AMCG00000830
AMCG00000829 mRNA upstream 88844 4684695 ~ 4703265 (+) True AMCG00000829
AMCG00000834 mRNA downstream 14863 4819205 ~ 4823894 (+) True AMCG00000834
AMCG00000831 mRNA downstream 29015 4833357 ~ 4838880 (+) True AMCG00000831
AMCG00000832 mRNA downstream 39750 4844092 ~ 4863848 (+) True AMCG00000832
AMCG00000837 mRNA downstream 220953 5025295 ~ 5034697 (+) True AMCG00000837
AMCG00000840 mRNA downstream 235606 5039948 ~ 5048084 (+) True AMCG00000840
TU157662 other upstream 3095862 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 3191470 1599696 ~ 1600639 (+) False AMCG00000723
TU157377 other upstream 4450338 339640 ~ 341771 (+) False G125561
TU159397 other downstream 3812857 8617199 ~ 8620195 (+) True G127134
TU159756 other downstream 5343515 10147857 ~ 10154187 (+) False AMCG00000949
TU160309 other downstream 7195322 11999664 ~ 12011425 (+) True AMCG00001002
TU161370 other downstream 10365569 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 10604770 15409112 ~ 15420880 (+) False G128823

Expression Profile