RNA id: AMCG00000835


Basic Information

Item Value
RNA id AMCG00000835
length 4819
RNA type mRNA
GC content 0.39
exon number 6
gene id AMCG00000835
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 4944217 ~ 4954174 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGAGTACAGGCTCAGTGGCACTGCATAGAGCTCTGCTGTCtgtctccacacacacacacacacatatatatatatatatttaagtcgGTTTCTCGTTGTAACACAACCCGAGGTCCTCTCCTGTGCTCAGATTATGGCTCCGCACACTTAGGCCACGACCGGGCGCGGTGTCGACGATGTCTCCCGGGGATATTGACACCTCTTTCCCCCGCGTTACCGTGAACCGGAGCCAGGTTGTCCATCCGGGCAGGTACTGAGCAGCGCGGCGCCTGTGCGGTGGCTGTCGTCCGGCTGTCTGCGCCGAGCTCACGCTGTGGCCGAGGCTGCAGGCCCTCGTCTTGGCCATGGGGATCCTCTTCACCAAGCTGTGGAGGCTTTTTAACCATCAAGagcACAAAGTGATTATCGTGGGTTTGGATAATGCTGGGAAGACAACAATACTGTATCAATTTTCAATGAATGAAGTCGTGCACACCTCTCCGACGATAGGCAGCAACGTTGAAGAGCTCGTAGTCAATAACACCCATTTCCTCATGTGGGACATCGGTGGGCAGGAGTCTCTGCGCTCGTCCTGGAACACCtactacacaaacacagagTTTGTGATCGTAGTGGTggacagcacagacagagagaggattTCTGTCACCCGAGAGGAGCTCTACAAAATGTTGGCTCATGAAGACCTTAAAAAAGCAGGGCTTCTGATCTTTGCTAACAAGCAGGATGTCAAAGGATGCATGACCGTGGCTGAAATCTCCCAGTACCTCAAGCTGACCTCAGTCAAAGATCACCAGTGGCACATTCAGGCCTGCTGTGCCCTCACCGGCGAGGGACTTTGCCAAGGCCTAGAATGGATGATGTCGCGACTTCGAGTCAGATGACCTCCGCTGTCATCTTAGACGGActtcttttttctcctccttttttCTCCCTATGTACGAGTTCGCACTTACCAGTCTGTCAGGATGACATTGGCCCTCCGTGGATGTGACGGTAATTTATTGCGTACTGTGGCTCGACTCAACAAAACACTTCCGTTACGATTTCAGGTttgggaaaaactaaaaaattgaaaagaaaatggagcCAAATGCTGCGACTGAGAGGATGGTTTAGCCTTGTAGTATTGATTACGTATCGGAGATAGTATTGGCctttatgtacagtatttagCATTACTTTGTGCCTGCATCGGAACCCCTCAATCCCAGACGAACAGgagaacagaacaaaagcaaagcaactCTTGATGGTCCTGtaaagtataattaaataaagcctTTTTATGTGTTATGGGTGCACCCAGCTTTGTGAAACTTTAGACAAGGCAGGTAAGTTAATTTAATCCATGTAAATGTCTTCAATTCTATGGGAGTCTTCCTGTGCAAAGTTATGGGGGGCAAGGCTCGTATATATTTTCTACGTTTCATGTTTCAGAGGGATCTTGGTactttaaacaaaagaaaaataatccaaaCAAGTGTGATTTATGTGGTGGCGTGGTACATTAACACTCTCCTTTCTGTAAAGATATTTTGATATGATGAATAACAGGTAGAACAATAGGTTTGCAAGATGatgtttttgttacctgcgtaTGTATGGATTTTCTGACGTTGATTTCAGGACTTGACGGCTACTTGAAGTTCTGAagaatgttttgttatttgtatcgACACACTGTATCTTTCTGTGCATTATCAGCTGCTGCGAATGTTAGGTCGGAGCTTCAGTGGACTCGGACTGTGCTGCCATTTTGTAGTCGTGAGGAAATGGCTAGCCAAGGTCTCTTGTTTACATAATTTTAAGAAgcatttcaagtttttaaatctCCCCTCAGAACCTAGCACCAGTAACCAggaaaaactttattttcatttttttgtctaGTACAATAAAAGAGGGATAAAAAAAGGCTTTGCTACTGGGATAGTCAGGAGACTGCATTAAGTAGGTGCAGTCTTCCTATTTATAAATATCTCTTGAGAGCTTGACTGTGTGTTTCTCTTACACATCTTGTGTTCTGGGCTAAAACAGCTAATGAGCTAAAGTCTCTTACTAATATACATTCATCCAGGTATCCCATATGTCTTAGAAAACAAGAGAAACTGGGACAATTCATTTTGAGGCCTGGCTAAAAATGATGATAGGAGAAAAGCTGACAGAAGAGTGACCGTTTATAGTAACTGAAGGACTGAGGTATACAGCTGGCTATATTCATGTTTACATTGAACTgccaaatacattgaaaagtaTAATGCTTTAAACAATGTGAAGGGGCTGAATCGGGCAGGGTGTGAGGGAAGATGCCAAGGCTTTATCTGGGGAGGAGTAGGGGAACCCGTCTATTCAAAAGATCTTAGTCTTAACCTTTCtctctaaaaatacatttattttctgaactaaaaaaaagaataaacaccCCTCAAATGGCAAACTCTCTTCACTTttaacaatcaataaaacaaatcaattaaactgAAACTTGAAAGCCTATGTGGTATTTTCCTTGGTAGATGCACACCAATCTATAGAGCTTCGCCATTTCTCTTGGGGAAGGGAAAACGACAAAGAGAGaacctttttatttaatggtacactgtgttttgcaattaaaagaATTGGTTTCAGTATATGTCCTGGTTGGAAAGGGACCGTTTTATCTGGACAGGCTGGGATCTTTCTCCATTCTCATCTGGGGAAGATTAGTCTTAAATATCTCAATTTCTCACTTTCTTTCCCTGTTGATCCACCTGAATAAAGCAAAATGAATCATATTTGGCTTCGCTCTTTGCAAACAGCATTTCTGAGACTACTCACTACACTTAAGACTTTCTCAGCTCGACGCTCTAATTGAAGGTCCCCTCGTCATGGAATCAAAGTGGTGATTTATGCATGCTTTTTTAGTTGTACCATTTTGAAGAAGGCGAATGGctatttattactttaaattTTTACCTAAATGGGTGTAAACGTGTCTAAACTTGCTTAATACACTTTCCAGTTTCAACCTTCACATTGTGGTGCTGTGTCTTTTACAGAGCCTGTgactttttttctgtgttgtattCTGGGAAACGTTTTCTTTTTACATCCTGATTCTTTGAGGTGGTAAAACAATTAGTGATTTCCTCCAGAATGAGTCATGGTTTCAGTTTTCCATGCCCTGGTTTGCCTCTAGTTATAAACCCCTACCCCTTGGTCTTTTGTATcctcttaatttgttttgattgtggCTCAACTCCCATCAGCTTTTATGAGTGCTTGTTTACAGTAGTTCTCAAAGCAGATCCATTTTAATTCTTCGGCTCTGACACAATGCTTTTTCTGTCATTTGTCctatttttttgtcttgaatCTTGTAGTTCTGTACaattataaacttttttttgtgtgtagatGTGTTTTTTGCAAAGCTGTGTTCAAGTACACTTGACTTGATTTGGGTTTTCAGAGCAGTATTAACTCCCTTTCAAACACATACTGCATGTTTAGTACCGTGAGCATTACGAAACCCTGAATTGTTGCCttattacaatttaaactgCAACCTCGCTTCTGACTTGTCATCTACTGTACTGACGAATATATTGAGAGCCCttatttttgtacatgtatCACAACCAAAAACATGGCTACTGATCAATACCCCTCATCTGCTACATTGATTTCAAGATTATGTATCTTTATATTGAGATTCATTATTTCAATACAGTACTTTAATTTCCTCAAGTTTTTTGCCTTTAATTCTCCTGCCTGATAGTTTTAGGGTTCATGCCGCGTGGGAACACTCACAGATTGTGAGATGCTGTGCATTTTCACATGAACTGGGTGTAcatgcctctgtgtgtgtgtgtgcgtgtacgtgCCTTTGAGTGTTCTGGACTTTCAGATAAGGTAAGCTTATAGTGTTTCTTAgagtatacattttctttgttttatacacTATTAAACCAAAAAGCATGACAAAAGGTAATGTGATGTACATAAGtatccatttaaatacacaacttGAACATTGGTTTGAGATGGAGTCCATTAatattgaattttttttaatttattttttttaacattcttaAGCATAATAACTTTtgcttttgtcttgtttttattatggtttgttttttgttacaaatcaaatgttaattattgtatagTACCGAAGccccaaatatttattttctatgctCAACATATATATGGGGACAAACAAACCATATAGGTTGTGCTCTATTAATTCAGATGACTCAATTTCAATCCTGTTATATGAaaattggattttaaattgtgtatttattaaaaggCAAACTGAGGGTTTGCAGAAGTCTTGTAAATATATTTCCTGACtgtgaaaatagtttttttttttttttttttttataaaataagcaTAACTAAAATGTCTGAAGCACTGTTACTCTTAAATAAAGCTAATGAAAGTGGAAAAAGTTTTACTAATGGTTTAAAGCAGTGACGACTGAAAATCACTGTGCTTTTACTGTGTAATTATATTCAGTTCAATTTAATGATAGTGGTCTTTTCACTTATTGTGTGTGATGTTTGAGGAATGAATGAGAAACATGTAATGtgggtttgtgttttatgtatataagCTACACTTTGTTTGTTACATAACTGGTTATGTTTTGATGCACTTATTTGGGtaatgttcaaaataaacacatttctgttaagtgATTTAGCCTGATGCATCATTATTCTAGGGCCTCTTGCACAGATGTTCATTTCAGAGTTTCAAAGATGATGCTTTTAAAAGGGAGAAACAGGATTTAGAGTAAataggatttgtttt

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07949 ARL5A; ADP-ribosylation factor-like protein 5A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158563 lncRNA downstream 166433 4773581 ~ 4777784 (-) True G126476
TU158562 lncRNA downstream 166433 4774848 ~ 4777784 (-) False G126476
TU158524 lncRNA downstream 235366 4703139 ~ 4708851 (-) True G126445
TU158508 lncRNA downstream 300751 4642680 ~ 4643466 (-) True G126432
TU158506 lncRNA downstream 302876 4641058 ~ 4641341 (-) True G126430
TU158667 lncRNA upstream 2964 4957138 ~ 4962530 (-) False AMCG00000838
TU158674 lncRNA upstream 59694 5013868 ~ 5034697 (-) True G126554
TU158684 lncRNA upstream 161880 5116054 ~ 5119036 (-) True G126563
TU158766 lncRNA upstream 418075 5372249 ~ 5372459 (-) True G126631
TU158803 lncRNA upstream 508393 5462567 ~ 5464052 (-) True G126665
AMCG00000836 mRNA downstream 5429 4864200 ~ 4938788 (-) True AMCG00000836
AMCG00000824 mRNA downstream 260576 4669268 ~ 4683641 (-) True AMCG00000824
AMCG00000825 mRNA downstream 293104 4646961 ~ 4651113 (-) True AMCG00000825
AMCG00000820 mRNA downstream 479473 4429747 ~ 4464744 (-) True AMCG00000820
AMCG00000821 mRNA downstream 540076 4401739 ~ 4404141 (-) True AMCG00000821
AMCG00000838 mRNA upstream 2965 4957139 ~ 4982651 (-) True AMCG00000838
AMCG00000839 mRNA upstream 60195 5014369 ~ 5024891 (-) True AMCG00000839
AMCG00000842 mRNA upstream 166933 5121107 ~ 5132844 (-) True AMCG00000842
AMCG00000843 mRNA upstream 183783 5137957 ~ 5174410 (-) True AMCG00000843
AMCG00000846 mRNA upstream 325370 5279544 ~ 5316096 (-) True AMCG00000846
TU158503 other downstream 307701 4636096 ~ 4636516 (-) True G126427
TU158313 other downstream 1287656 3652657 ~ 3656561 (-) False AMCG00000804
TU158094 other downstream 1794965 3131714 ~ 3149252 (-) True G126096
TU158093 other downstream 1810400 3131714 ~ 3133817 (-) False G126096
TU158081 other downstream 1894266 3044257 ~ 3049951 (-) True AMCG00000771
TU158856 other upstream 618531 5572705 ~ 5573027 (-) True G126700
TU159187 other upstream 1757784 6711958 ~ 6733817 (-) False AMCG00000888
TU159288 other upstream 2675741 7629915 ~ 7645722 (-) True G127039
TU159607 other upstream 4464822 9418996 ~ 9419325 (-) True G127292
TU159787 other upstream 5320513 10274687 ~ 10278211 (-) True G127443

Expression Profile