RNA id: AMCG00000837


Basic Information

Item Value
RNA id AMCG00000837
length 3605
RNA type mRNA
GC content 0.37
exon number 6
gene id AMCG00000837
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 5025295 ~ 5034697 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCGCAATTTCCTGCTTCGGAGCGACGGGAGGAGATCAGCGAGTCCCAGCGAGAGACATGGCAGCACCCGCTCCCGGGGCCGGCAAAGCGACGCACAACGATGCGTCCCACAAGCGCAAAAAGGGGCCGGGGGCTCTGGCAACCGCCTACCTGGTCATCTACAATGTGGTCATGACGGCAGGGTGGCTGGTCATAGCTGTTGGACTGGTCCGTGCATATCTTGCCAAAGGCAGCCATCACGGCCTGTATTACTCCATAGAAAAGCCCCTGAAGTTCTTTCAGACGGGGGCTCTCCTAGAGatattacactgtgctgtagTAACGGAAATTATCCGCTACTCCTTCTACACATTCAGCCTTCTCAACCATCTTCCATACCTCATTAGATGGGCCAGATACACTCTCTTCATCGTTTTGTACCCCATGGGTGTCACCGGAGAGCTGCTGACCATATATGCCGCTCTGCCCTACGTCCAGAAGACAGGGTTGTATTCGGTGACACTGCCGAACAAATACAACTTCTCCTTCGACTACTACACATTCCTCATCCTGACAATGGTCTCTTATATTCCCCTTTTCCCCCAGTTGTACTTTCATATgatgagacagagaaagaaagtgttGGGACCAGCAGAGGACTACAGTAAAGTGGAATAAATCCGGCGGCGCCCCAGACGGAATGATTAATACAAAGTAGACGACCGCagaaaagattacattttaaatgttgcctGACAAATTTAATATCTGCTCATCAAAAATGAACCCAAATGTCtcaaatggggggaaaaaataataggGCCAGGATGATTACTAACACAGTACTCGTTTGTAAATGAACTTTTAAATATTGGGAtgttgcattttgaaataaaagatGAGATGCTTGTTTCTAGAAGATGAGAACATGCAAGTATTATGATAACCAACATGCTTACAATGTGATAatggtaaaattaaaataaatacacttaatATGAATGTAACATCTGGTGTTAGTTGGCAGAGTCACTTAGgatactgaaaaaatatagaatttcTTAGTTCTACGAAACCAGTCGGTAATCATTCTGTATTATTCCTAAGAACCCTTATATTCGTTAGCAGTGTacgtaaaaaatgtaattaagaacaCTGCTAGTTTGCTTTTCCCATCATTGACTGTTTTGTAAGGCTGGAGCAATTGATTTATgggtaatatatttattaatcaatgtGATGAAAGAGCAAAATCTAAAATTCAGCAGATTCTGTGGAGTGTTGTGCAACATTACtagcaaacaataaataaatatacagcaaCGTATAAATACGTGAGATCTCACACCATCAGTGTTTGTGTATCCCAGCTGAAGGGAAAAAAACGAATTGGTTCAAAGGAAGTGTGTTCAAATTGTACACAGAATCAGGGAAAGTGATTTGAAGGTAGCAGAGAAAGACACATCTTTGCAAAGAATCacattaataattgaattaaatgcaaagatattaaccaaaacaatataattaattgatgCACTGGCTCAGCCTTACTGTTTTGCTCATGAGGGAAAAAATCCatattctataaaaaaaaacaccacttttTGAGTTCATTTTAATAGGGGTGAGGACAGGTTAAAAGTATGCATATTGTAATGTTcataaattgaattattcagCAGAAACCAAGCTTACAGGGATATCTCCCCAACGGTTCCAGATCTATTTTCATAGTAAAATAACGTTAAGCTTGTTTCGCACATATTATTATACTACTGTTTCATCGTTGATCTGTTTAAACTGGAATTGCAATCTTGACCGTGAATTGTTTACCTGTTTCCCATCAATCTTGTTTATATTTCTTAGTTCAGCAAAATTACCTGattatataattacatgaaATTAACGTAGCAACACATAAGACTAAGCATACAATAAACGTAGCAGTGTAATATAGAGTTTTGTACAATTAAATAAGCCTTAATAGactttttgtgtatattttttcgATTAATTTATTGAACTTTAAAGCTTTACCTCGTTAGTGATGATAAACCGAACCCATTTAATCCAAGTGAAACCTGTGCACTGAACATTATGGGAAAAGGGGTCTGGCTAATCCAGTAATAAagtttgtgtttgcattgctacagttcatgcattttattatataattaaagcaCTGAGTAGCTAGAACTACTAAACCGTTAAGAAACAGAAAGCCTCGACCAAACTAGAAACCAAGGTGAATCAGATGAACTCCTTTTGGAGTCACGCATTTCCAGTCATTCAAATCCAGTAATAACTGCAGAAAGATCTGAAGGGAGTGTAGTTGAATGCATGTCATCTGCTCTTTAGTTGGTTGTAAAGAGGGACCAAGAACAGGGTAATGTTTTATAGAGCGTCTAAGCTTAGTATGGGTTCCGTTTACagcatttatattcatattgcCTATGCTAGCATTAGAGAGAGTTTTGTACAGTTTTGACATATCAGGCTCAAATAACTGCCACAGTTTTGTACGGTTTTCCTGCTCTACTGgtcaaattaattattgatttataaatagctaaccaacaaacaaacactagcTTTACACAGTTAGGCTTGGAAATTGTAACTGTTTTAGCTATGGCttctttttagtttaattaagagtatcttttaatattttatagtacTTTAATAGTGTTTGCATATTTTTAGTTCAATTGTTTTGCTGgacttttgtattttacaaaatcatACTGATGCTAAGGATTggtcatttgaaatgcattttaatcctAACTTTACATGCACTTATTTACAGTTCTCCTAATTCAGATATTGACTCTGTGTGTTATTCTGTCATGATGCAGTGACTTCATCATTCTGTCTttaaaagtacaatacaaatcGTGTTGCAGGTGATCTTCAATATCTTTATCACCGTAAATATTGGTAAGAATatgtaacaaacaaataataataataataaaatccttaTAATGAAGCCAAGGTGTTCCTGAAACAAAATCCTTTTATTATCTAGAGCATAATAAAATCGATGTTGTACTTTATCAGTGTAGTTGGTTTGTACCGTGTTGTTTTCCCTGATAAACAGTGCGTTGTTTCTTGAAGGGTCCTCTCTGTTATTTTCAGTCTTTCCTGCAAGAGTTTTCAATGAGAAATTGCAAAACTTGGCTGAATTGCATGGTGTCTGGTTTTCCCTTGCTGGAATTTATGACAGTTACTTCACAGTAGCAGGTTGGTATTGCAAGGTTAGGAGAAATGTCTCgcatagatttaaaaaaaaaaactttgcaaatattgtataatgtatCAGCATGGCCATGGGTTTAGCAAAATTGAAACATGTATATGACTttcaaatacagtgcagttctgtGTAACTTTGCatgtcaacagaaaaaaaaaatcaccttgtGTCCCAATATGGCACTATTGGGGGGAGAAAAAGCACGTAACATTTTACTTGGATTCAATTTAACAAGGTTGGGCTTTTTGATACAAACCTTTTGCATGGGACCATTATCTTCAAAATATGAGACCAGACTTTGTATAATATAGcaagtaatataatatatatttgcaataaaCTCTTAATACAGGAAGCAAAA

Function

GO: NA

KEGG:

id description
K10703 HACD, PHS1, PAS2; very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158587 lncRNA upstream 144792 4876867 ~ 4880503 (+) True G126500
TU158588 lncRNA upstream 147649 4876867 ~ 4877646 (+) False G126500
TU158436 lncRNA upstream 780259 4244732 ~ 4245036 (+) True G126368
TU158362 lncRNA upstream 1295239 3725920 ~ 3730056 (+) True G126301
TU158294 lncRNA upstream 1352119 3670802 ~ 3673176 (+) True G126248
TU158693 lncRNA downstream 86348 5121045 ~ 5124330 (+) True G126568
TU158694 lncRNA downstream 86507 5121204 ~ 5123938 (+) False G126568
TU158695 lncRNA downstream 91862 5126559 ~ 5126808 (+) True G126569
TU158696 lncRNA downstream 92617 5127314 ~ 5127656 (+) True G126570
TU158698 lncRNA downstream 93810 5128507 ~ 5130661 (+) True G126572
AMCG00000832 mRNA upstream 161447 4844092 ~ 4863848 (+) True AMCG00000832
AMCG00000831 mRNA upstream 186415 4833357 ~ 4838880 (+) True AMCG00000831
AMCG00000834 mRNA upstream 201401 4819205 ~ 4823894 (+) True AMCG00000834
AMCG00000833 mRNA upstream 220953 4792109 ~ 4804342 (+) True AMCG00000833
AMCG00000826 mRNA upstream 253286 4752867 ~ 4772009 (+) True AMCG00000826
AMCG00000840 mRNA downstream 5251 5039948 ~ 5048084 (+) True AMCG00000840
AMCG00000841 mRNA downstream 47159 5081856 ~ 5115984 (+) True AMCG00000841
AMCG00000844 mRNA downstream 187300 5221997 ~ 5265705 (+) True AMCG00000844
AMCG00000845 mRNA downstream 281500 5316197 ~ 5332706 (+) True AMCG00000845
AMCG00000849 mRNA downstream 362628 5397325 ~ 5404570 (+) True AMCG00000849
TU157662 other upstream 3329048 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 3424656 1599696 ~ 1600639 (+) False AMCG00000723
TU157377 other upstream 4683524 339640 ~ 341771 (+) False G125561
TU159397 other downstream 3582502 8617199 ~ 8620195 (+) True G127134
TU159756 other downstream 5113160 10147857 ~ 10154187 (+) False AMCG00000949
TU160309 other downstream 6964967 11999664 ~ 12011425 (+) True AMCG00001002
TU161370 other downstream 10135214 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 10374415 15409112 ~ 15420880 (+) False G128823

Expression Profile