RNA id: AMCG00000839


Basic Information

Item Value
RNA id AMCG00000839
length 3021
RNA type mRNA
GC content 0.45
exon number 15
gene id AMCG00000839
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 5014369 ~ 5024891 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCACTGCCCTCAAACGAAGCTGCCCGCTGCGATGCACTACTGGTTTCCCCCAAACCCGAGGCCGCCTTCCGCACCAGAGGGATCAAGATGCCTTTATTCACGCAGAACCCGTTTGATCAGGATGTGGGGGGTTTTAACAGAGCTAAAGAGTGTCTGAAATCCATAATGAAGAGAGTCAACCACAAGGTCCCTCATGTTGCAATGCAGGCTCTGACTTTGCTGAGTGCCTGTGTCTCAAACAGTGGCAAAATCTTCCACTTAGAAATCTGTTCCAGAGACTTTGCCAGTGAAGTCCGCAGCTTATTGAATAAGGCTCACCCCAAGGTGTGTGAGAAGCTGAAGGCGCTGATGGTGGAGTGGGCCGATGATTTCCAGAAGGACCCTCAGCTCAGCCTCATTGGGGCCACAATCAAGTCCCTGAAGGAGGAGGGTGTGGTGTTTCCCTCCTCCAGCTCACAGAGCTCCACAAGCACAAAGTCCAGTGCCCCTGCAGCTGGCAAAGTCGTGGAGGATGATGACTTGGCAAAAGCCATCGAGCTATCCCTGCAGGAACAGCGTCAGCAGCAGACGGAGACACTCCCCATCACTGTCCCCGCGGACCCCCCGTTCAACAGCAACGAGTCCCGCAAGGTGCGCGCCCTGTACGACTTCGAGGCCGCGGAGGACAACGAGCTGACGTTCAAGGCGGGAGAACTCATCATCGTTCAGGATGACAGTGATCCAAACTGGTGGAAAGGCGAGAATCACAGAGGTGTCGGTTTGTTTCCATCGAACTTCGTGACGACCAACCTGAACTCCGAGCCCGAACCAGCTGCATTTGTGGAAAAATCTGCCTTGCCTGAGGAAACCAGCTTAGAAGCCAAGATCGAACCCGAGCCCGTGTTCATAGATgagGAAAAGATGGACCGGACTCTGCACTTGCTTCAGAACACAGACCCAGCCGACACACAACCGGACTCTTCAGAGCTTTTGTATCTCGAAGATGTTTGTCGTCAGATGAATCCAATGATTGACGAAAAATTGGAAGAAATAGACCGGAAACACTCTGAGCTCTCTGAGTTGAACTTGAAGGTCCTCGAGGCCCTGGAACTCTACAACAAGCTCATGAACGAGGCCCCGATGTACTCGGTCTATTCCAAGATGCAGCCCCAGGCACATTACCCACAGACGTCAGCCAGTGTCCCAATGCAGGGCTACCCAGGGCAACCACAGAGCGCCACATACATGCCATCAGGCCTTCCTCAGGTGGCCCCCGGACAAGGATACAGTTTGGGCCCCGAGCAGGCTGGCCCTCTGAGGTCGCTCCCGCCAACTGTTAACTCATCGATGGCCAACCAGCCCGGGCAGACTCCATACATGAGTGGTATGAACGCAGGTTACATGACCCAGAGCTCTGGCGCCCCGGCCCCTTACCCACAGCAGGTGGGCATGGCTATGGACATGTCAGCCTATCAGAACACTAATCCTAACATGACTCCAGCATCCACATATCCAATGGTCACGCCAGCGCACCCTGGCCCACCGCAGCAAGCAAACTATTACCAGCAACCTCTCCTTTAATAAGCTACAGTAGTGACCTTGATTTCAGTGCATATCCTTAAAaccagttaaaacaaaacatttagattGCATGGTTTTTAACATGACATTGATTTACTCCTGCTATAGATGGCAGATGCAGTAGACTTTATTGACAGAGAATGGTAGGAAGTATTGTTGCCTCTTGGAGATGAACGACACGTGCAGAAAAGCCTAATTATGAATCCccgttaatttaatttaattaaaagcctAATGACTATGAGGCcttcattcttttcatttttcctaaacacaaagaaaaccatAATTGTCAGGATACAGCATCTTCATAGAGACAGTTCTTACCAGTGAGACGGATGGACAGATATTGTAGTAGTGTAACACATCGGGCTGTTTTTATCCAATGCAGTATGATGTGTTATACACGCATTCATATTATGCATATTTAACAATGTCCataaaaaaactgttaattaatattgaaaaatcAGCTCAACCCCCTCCTCAAAAAAACTGTGTTTGTAGCACTGTGAAAATaggatttttttcaaattaattttaaatttgcttGGCATTTATATCAAGTAGTCTGATATTTTTTCCTCCCAAATCTATTGTGAGTCAATTACTAGTGACTTAAAAGCTTCTGAGTTTTCACAAAGTTTAATAAATTGTTATGAAGAGGAGAACGAAACTACAGTTATCATTTGGTGTTTTCCTGGTGGTCAGGTTCACATGCATTTATCATGCAAGACATGATTTAATATCTGTATACCGGTGAGGAATTAATTTGACCATTGACAGATAACCAAGCTGAGTTATACCCTTTATATGGGTATAATGGACACAAAACAGACCGAATCCCTCAATACAAGTGTGATGGAAAAAATTATACTTAACTGAATGTAAAGTAACCTgctaataacatattttatttgctttgtgtttgtgccAAGATGTTACCATTTAGGATGGTGTTTGTGTCttggattaaaacatttatttcagataatacaaaaaagaaagcatgatGTTAGTGGTTGTCAGAATATTTTTTCTCCAGGAAGTAAAATCCCACTGGAATCCACCTTGttacttttgtatttacttattcgCTGCCTACATGTGATATTCACTTATTTGGCAGCGTCTCATTCAGCTTTTTACTTTGGTTAGATGATGTGCATTGTgggaatgtttttgttttaacactttGTATTGGGGGTGAGGGGACCCACGTGCACaggttgttattaatattaactgtGTGTCCGAATTAGTATTCATATGTTGAAAACCTTTTGTTCTAAAACTGCTTTCTGTAACCTTTTTAGTCCACCATTGGGCCCACGATACTTTGATTTATACAGAAGGAacttttaatatgcaaatactaGTTTCTCTGCACAGTGTGACTGAAGCTGTAGTTAGGcttctaattaaatatttgtaaattgtaaacctCTCATGTATCTTGG

Function

GO: NA

KEGG:

id description
K04705 STAM; signal transducing adaptor molecule

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158667 lncRNA downstream 51839 4957138 ~ 4962530 (-) False AMCG00000838
TU158563 lncRNA downstream 236585 4773581 ~ 4777784 (-) True G126476
TU158562 lncRNA downstream 236585 4774848 ~ 4777784 (-) False G126476
TU158524 lncRNA downstream 305518 4703139 ~ 4708851 (-) True G126445
TU158508 lncRNA downstream 370903 4642680 ~ 4643466 (-) True G126432
TU158684 lncRNA upstream 91163 5116054 ~ 5119036 (-) True G126563
TU158766 lncRNA upstream 347358 5372249 ~ 5372459 (-) True G126631
TU158803 lncRNA upstream 437676 5462567 ~ 5464052 (-) True G126665
TU158854 lncRNA upstream 545053 5569944 ~ 5572133 (-) True G126698
TU158942 lncRNA upstream 918495 5943386 ~ 5949894 (-) True G126767
AMCG00000838 mRNA downstream 31718 4957139 ~ 4982651 (-) True AMCG00000838
AMCG00000835 mRNA downstream 60195 4944217 ~ 4954174 (-) True AMCG00000835
AMCG00000836 mRNA downstream 75581 4864200 ~ 4938788 (-) True AMCG00000836
AMCG00000824 mRNA downstream 330728 4669268 ~ 4683641 (-) True AMCG00000824
AMCG00000825 mRNA downstream 363256 4646961 ~ 4651113 (-) True AMCG00000825
AMCG00000842 mRNA upstream 96216 5121107 ~ 5132844 (-) True AMCG00000842
AMCG00000843 mRNA upstream 113066 5137957 ~ 5174410 (-) True AMCG00000843
AMCG00000846 mRNA upstream 254653 5279544 ~ 5316096 (-) True AMCG00000846
AMCG00000854 mRNA upstream 329495 5354386 ~ 5370155 (-) True AMCG00000854
AMCG00000852 mRNA upstream 356249 5381140 ~ 5391829 (-) True AMCG00000852
TU158503 other downstream 377853 4636096 ~ 4636516 (-) True G126427
TU158313 other downstream 1357808 3652657 ~ 3656561 (-) False AMCG00000804
TU158094 other downstream 1865117 3131714 ~ 3149252 (-) True G126096
TU158093 other downstream 1880552 3131714 ~ 3133817 (-) False G126096
TU158081 other downstream 1964418 3044257 ~ 3049951 (-) True AMCG00000771
TU158856 other upstream 547814 5572705 ~ 5573027 (-) True G126700
TU159187 other upstream 1687067 6711958 ~ 6733817 (-) False AMCG00000888
TU159288 other upstream 2605024 7629915 ~ 7645722 (-) True G127039
TU159607 other upstream 4394105 9418996 ~ 9419325 (-) True G127292
TU159787 other upstream 5249796 10274687 ~ 10278211 (-) True G127443

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00073438 True 2962 mRNA 0.43 14 NC_007120.7 38043337 ~ 38065147 (+)