RNA id: AMCG00000842


Basic Information

Item Value
RNA id AMCG00000842
length 3683
RNA type mRNA
GC content 0.39
exon number 7
gene id AMCG00000842
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 5121107 ~ 5132844 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGTAAACACAGCCGCCTGTCTGCAGAGGGATACGGGGATGAAATGTAACCCATAATAAGCAATGCGACGCCTTTTTTCTGGGACAAAACTCCGTCCAGAGCACCCGTCATCGGCACCATTTTAATACCCGGTCACATTCAGGTGGGCAGTGTCAGAGATTGACGATGTCCACAGTCCTGTTTGCTTCGGTGGTCCGGGTGCGAGATGGTCTCCCTCTGTCTGCATCCACTGATTATGAGCAGGATAAAGGATTGCAGGAGAGTAAGAAATACCTGAAAAACCTCTCCAAAAAACTAAGCCAGTTTCCTGACAGGTGTATGCTGAAAGCTGGACAGTACAACATCAATTTTACAAGTTCTTTAGGGGTCAGTTATATGATGGTGTGTACAGAGAGCTATCCCAATGTCCTGGCCTTCTGCTTCCTGGACGAGCTGCAACGAGAGTTTATCGTTTCGTACGACACAAAGCGGATAAACAGTGCTGTTCGACCGTACTCCTTCATTGAATTTGATAATTTCATTCAGAAGACCAAACAGCGGTACAACAGCCCTCGGTCCCTGTCAACGAAGATTAATCTCGCCGACATGCAGACGGAAATCAAGCTCAGACCGCCCTACCAGCTCACAGCTGCAGATGTAGGGACCGTCAATGGATTTTCACACCCGTCGCCCACCAAATATAAGGGAATAGCTCCAAACCAAATGCTGGAGCCCGTGACTCTTGCTGGGATCGTGTCTTGTGTGTTAAGCCTGCTCTGTGGCGGTCTCAATTTAATCCGTGGAGTTCATGCCATTGAAAGCATATTGCAGAATGAGGATGAAGactttaattatgttattgCCTTCTTCCTTGGAACAGCAGCCTGTTTGTATCAGTGTTACCTGTTTGTATACTGCACCGTATGGAGGAACTTCAAATCTTTCCTGGCTTTTGCTTTAATCTGCCTGAGCAACATGTACCTGTATGAACTGAGAAACGTGTGGCAGATCTTATTCCATGTGACAGTGGGGGCTTTCATCACACTGCAAGTCAAACTACGGCAGCCTCAAGGGAAAGCCCCCGACTACAATGTGTGAGACGGACACTGCCCGAGAAAAGCCCTGGGACACTGAAGGGGTCCTGCCAAATACGGGGCGATTCTGACGCAGAGACGGCAAATTCCTGCTGAAATtcacaaaaactgaaaaccaaGATGGAAGACCAAATACTAGAACGGTTGACGCTGCTCGTGGTGAAAGTTCCCAGTGTGTCGGAACGATGCATTTCACATCTTACAAGTGTGTAAGCATGCACATCATTAATACTATGCAGGTTTCAGTGCAGCACAGCAGAGCACATTGAGGATGTTTCTTCATTTCTATGagttcaaaatgtttatttagttgttgtttttttaagccatAAAGGcctcatttttacttttaaatgtgtacatcttattgttatttatttggaatgACCAACTAACTAATTTAAAGGCTTCTGTGAGCTGCACAAGCTTAGTCACAAGCGGAGACTTTCACTAAAACAGTTGACACGCACGCTAGAGAATGGGCACCTCTGGAGGTTCTTTTATGTGAATTAAATTGTTGCGGACTaaactggtgtttttttttaattaattgttttagtttgtttcctAAATTATTAAACAACAGATTCCTCTTCATCTTCTCCATTCTGTTTTCATGAAtacctttcattttatttacctCCTCTGGATAGATaaagcacccccaccccccaaatatcaaaataaatagaagaaaacCACAGCCTGACTTAATGACTACTAGAAAAAACAGGTCTTGGTGCAGAAAGACGTTTGTCAGCAGTTCTACTCGAATCATGTACTGAAATCACGACTTCACGATTCTATATTGAGTGACAATACTGCCAGTTTTATAACAGTAGTGATGGACGCTGCTGTATTTGCCTTAAAGTCCTCATAAGTTCGCCTAATGTGTCCCTTTAAGCGCTGCTATTTTGATAAACCCTATAGTGATGCTTGAGGCACACCTTTCATTTCTATCAGATGTATCATACTTCATAGTGTTCAGCTGGATAAAATCAATCTCTCAGTGAAGTTGCTGGAAACTATTTGTCAGAAGGCTGGAAGAACATCATAAAATACAGGGTTCATATTTTCTGACTTTCTTTTTGGGTTAATTTTAAAACCTTAATTATATCTTTGAAGTTTAAATGTCTAGTGATTTTTAGAGGTAGTGCATAGATATAAAAAGTGAACTATAATGGAGTGTAATGCCCATGTCTACATATATGTTTTGAGACTGTATGCATTGACTTGTTTGTGGCTGCAGAATTAATATTTAGAGCATAACAAacattatacatgcatttaaagaGATTGCTGTAACAATTTAATAGTGTTCTGTAATTATAAAACGAGTTAAATAACCTGTGGGCATAAATTGTATTATCTTCtcaaataatcaaatttgtGAAACTGTCTGTTTATAGTGACACGCTCTATTGGATTTAAATGGCACAGATAGGTTGACAAAGAACTCCTCACCTCAGAGTCTGACCTACAGGAATAAAGTACAAAGCggcatttcaatgttttaataaaaattatataaaatatttatacaagaagcatatttgatttcaatttttcaaatttcagaCTGTAATGTATCTGAcgttaatatatacagtgcaaatatattCATCCTGGAATGTGAAAACTGGTTCTCCTTTGTTTACTTCATTTTCTGCATTCCTCGTCTTTAATttctaaagtaaaatacattattatggACTGCCTCccattttaaattgttcatgTCTCACTGGGCTGTAATGTTTCAGCGTTTGACAAAAGGCACACTAGGGAAGAGAATGAAATCATGGGCATAGACAATAATAAGGTTTAATGTGTCTGCTGGTGAAACTATGCAGTTGTCCAAATTCATTAACAGTggcataattgttttaataaacctCTTTCAGAAATTAATTTCCGTGCATTACTGCATCGTAGCTACACTCATTAGTTTTTTGTGGGGTTTATgcttaaattgtgttttgcagCTTCATAAATACAGTGGGTTATGATGATTAAAAAGCACCAGATTCAGTTGGCTGGTGTGTATTCACTATTTTGTGCTGCATATTTCCATAGCAGTAGCTGAGCATTATCTTGTAAGCGCACAGTTTCCTTCAGTGTTGCCATGCTGATAATGGCAGGCTGAAATATTTCTGaattttccattgtgtttacatcTCCCATCTCAACACAGGATAAAGCGAATAATAAACCGCTGAGCAGAAGCTTTCAGGGTTACCGTACGCCTTGTTTAGACTGTTCATTGCAGAGATCAAATGTAGTTGGATTCTGAGAAAGTATTAAAGgaattatttataaacactgTAGTATGTTTAATTTTAGCTGATACTCATTAATTTTAGATCTTTTAAGGTTCTGAGTGATTATATACAATACTCAGTGTTGTTTGGAAAACTACACCTTGGAGCAATGAATAACTCACTTTATAAGCATCATGTTCTCGGAGCAAAAGTGTTcaatatttgcataattgaTGGGTTTTACAATGCGTGTGGCATAAtaatgctttttgttgtttactTCATGTTCATGTAAACCAATAAACAACAGGagcttatttaatatttcatgtcTAATCTGTctgtgcggg

Function

GO:

id name namespace
GO:0006887 exocytosis biological_process
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport biological_process
GO:0048280 vesicle fusion with Golgi apparatus biological_process
GO:0031201 SNARE complex cellular_component
GO:0005484 SNAP receptor activity molecular_function
GO:0000149 SNARE binding molecular_function

KEGG:

id description
K08520 SEC22A_C; SEC22 vesicle trafficking protein A/C

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158684 lncRNA downstream 2071 5116054 ~ 5119036 (-) True G126563
TU158674 lncRNA downstream 86410 5013868 ~ 5034697 (-) True G126554
TU158667 lncRNA downstream 158577 4957138 ~ 4962530 (-) False AMCG00000838
TU158563 lncRNA downstream 343323 4773581 ~ 4777784 (-) True G126476
TU158562 lncRNA downstream 343323 4774848 ~ 4777784 (-) False G126476
TU158766 lncRNA upstream 239405 5372249 ~ 5372459 (-) True G126631
TU158803 lncRNA upstream 329723 5462567 ~ 5464052 (-) True G126665
TU158854 lncRNA upstream 437100 5569944 ~ 5572133 (-) True G126698
TU158942 lncRNA upstream 810542 5943386 ~ 5949894 (-) True G126767
TU159089 lncRNA upstream 1201869 6334713 ~ 6335866 (-) True G126873
AMCG00000839 mRNA downstream 96216 5014369 ~ 5024891 (-) True AMCG00000839
AMCG00000838 mRNA downstream 138456 4957139 ~ 4982651 (-) True AMCG00000838
AMCG00000835 mRNA downstream 166933 4944217 ~ 4954174 (-) True AMCG00000835
AMCG00000836 mRNA downstream 182319 4864200 ~ 4938788 (-) True AMCG00000836
AMCG00000824 mRNA downstream 437466 4669268 ~ 4683641 (-) True AMCG00000824
AMCG00000843 mRNA upstream 5113 5137957 ~ 5174410 (-) True AMCG00000843
AMCG00000846 mRNA upstream 146700 5279544 ~ 5316096 (-) True AMCG00000846
AMCG00000854 mRNA upstream 221542 5354386 ~ 5370155 (-) True AMCG00000854
AMCG00000852 mRNA upstream 248296 5381140 ~ 5391829 (-) True AMCG00000852
AMCG00000850 mRNA upstream 259758 5392602 ~ 5396386 (-) True AMCG00000850
TU158503 other downstream 484591 4636096 ~ 4636516 (-) True G126427
TU158313 other downstream 1464546 3652657 ~ 3656561 (-) False AMCG00000804
TU158094 other downstream 1971855 3131714 ~ 3149252 (-) True G126096
TU158093 other downstream 1987290 3131714 ~ 3133817 (-) False G126096
TU158081 other downstream 2071156 3044257 ~ 3049951 (-) True AMCG00000771
TU158856 other upstream 439861 5572705 ~ 5573027 (-) True G126700
TU159187 other upstream 1579114 6711958 ~ 6733817 (-) False AMCG00000888
TU159288 other upstream 2497071 7629915 ~ 7645722 (-) True G127039
TU159607 other upstream 4286152 9418996 ~ 9419325 (-) True G127292
TU159787 other upstream 5141843 10274687 ~ 10278211 (-) True G127443

Expression Profile