RNA id: AMCG00000843


Basic Information

Item Value
RNA id AMCG00000843
length 3978
RNA type mRNA
GC content 0.44
exon number 18
gene id AMCG00000843
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 5137957 ~ 5174410 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCGTATCCAGACGTGGCAGCAGCATCATGGCTACTTGGATTCGCTGCGCATCCAGTTCCTCATGTGTGACAACCCAGATTACaccatttgcagaaatacatTTCCTCTCAAGAGCGCGCTCCCTGCGTTGTTGCTGGCAGTTAAAGTCTCCCCTCTTATAGAGAAAGTCAGCGACCACAAGGACTTCAAAAAACTACTGCGAACAAGAACCAATGTCCTCATCCTGTACACTAAATCAGCCACCTCTGGTGATGGTCAGCTAAAACTGCTGTCAGATGTGGCACAAGCTGTGAAGGGCCAGGGTACCATTGCCTGGGTGAACTGTGGtGATTCGGAAGGCAGAAAATTGtgcaagaaaatgaaagtgGATCCCAGTTCCAAAAAGGGTGGAGCTGAAATGCTACATTATAAGGATGGAACCTTTCATACTGAATACAACAGGCCTGAGACATTTAAGTCCATGGTAGCTTTTTTAAAAGATCCGACCGGGGCGCCTCTGTGGGAAGAAAATCCAGAAGCGAAGGATGTTGTTCACCTTGAAAATGAGAAGGATTTCAGGAAACTGCTAAAGAAGGAGGACAGACCCGTTTTAATGATGTTCTATGCACCTTGGTGCGGTGTTTGCAAGAGAATGATGCCAGCCTTCCAGCAGGCTGCCACAGAAACAAAGGGTAAATATgTGCTAGCTGGCATGAATGTGCATCCCGCTGAGTTCGATGCATTAAAGCAAGAGTACAGTGTTAAGGGCTACCCGACCTTTTGTTACTTTGAgaaGGGGAAATTTCTCCATCATTATGAGAATTACGGAGCCACAGCAAAGGATGTAGTGGAGTGGTTGAAAAACCCTCAGCCTCCTCAGCCCAAGACCCCCGAGGTCCCTTGGTCAGAAGAGAGCTCTGATGTCTTCCACCTCACTGATGAGAGCTTTGACCAGTTTCTCGAGGAGCACCCGTCAGTTCTGGTTATGTTCTATGCCCCATGGTGTGGCCACTGTAAAAAAATGAAGCCAGATTATGACGAAGCTGCAGCCATTCTCAACAAAGACAAAGATAGCCCAGGTGTCTTGGCAGCGGTCGACGCCACGATCCACAAAACGATCGGAGAGCGGTACCACATCTCGGGCTTCCCCACGGTGAAGTACTTTGAGAACGGAGAGGAAAAGTATACAGTGCCACATCTGCGGAGCAAAGACAAGATCATCGAATGGCTTCAgaaCCCACAAGCACCCCCTCCTCCAGAGCAGTCCTGGGACGAGAAGCCATCCAGCGTCAGCCACCTGGGAGCTGAGGACTTCAGAGAGGCGCTCAAGAAGAAGAAGCACGCGCTGGTGATGTTTTACGCCCCCTgGTGCCCTCACTGCAAGAACGCAGTCCCCCACTTCACAACGGCAGCCGATCTCTTTAAAGACGACCGCAAGATTGCCTACGTAGCTGTCGACTGTACTAAGGGACTGAACCACGATCTTTGCAAGCAAGAGGGTGTGGAAGGCTACCCAACCTTCATCTACTACAACTATGGGAAATACGCAGAGAAGTacaatggagagagagggGAGTCCGGGTTCATTGGCTTCATGAAGACCCTCCGGGGCAAGGATCAGGAGAAAGTAGGGAAGAGGAAAGATGAGCTTTAACGCCCTTGTGCCGGGAAGAAGGAGCCCGCCGTTGCACTGTGAGAGAGGCGGAGCCCTTCGTCCACGAGAGCCAGAGACTTCACACCTCATCCGAGACCATTTTTATACCGCCGAGCAGTTTGTACAATATTTCTTACACAGTCCGACCacttgagatttatttttgtcgTTAGAAAACGAATAAAAACGATAAAAaagggttttaattattttaatccgAAGAATCGCCCATTTCCCCCAGATCCTGTGACTGCCGATCTCACGTATTACTCTACCTATGCAATACAGTGTCCTCCCCAGTTCTGGCAGACGCCGTCGGTGTTGGGCATGTTCCTTTAAATTGGATAATTGAAACTAACTCAAGATGAGTTCCTAAGAAGAGGGGgagaaatatattgtatgttcaAATCCCAAGATAtttttgtatgaaaatgtttgagTTGAAAAGTATACATATAGTCCAAATTGTGGCCTTAAGTTAAAGTGTGTGGAAGATCCTTGTTAAAGAAATATCCCAAGCTTTCCATACACTTGTGAGATTATCAGTGATTATAGGTTGGGCTTTTTTTAACTGTAACAGCAGTGATGTGTGCTGGTGTAATTTTGAACTAGTTGTTCTTtatcccccctccccacccctgtGTTTTATAGTCTGTTGTAAAAAcgccaaaaataaatgaaatgtttgaaagACAAGTGGTGTGACACAAATAACAAGGTTGAAGCTGATTTCAAAGGAAACGTTTTAAAAGCAGGGACCATGTCTGGTATACCATTTCCCAGcacatcatttattttgctgtaggATTTTAAAGGTCAGTTCTTTAAAACTGCAGTTCTGTTTCAGTGaaaatgcagttaaaatatttttaaagagtcCCTCAAAATCCCATTATTCAACATAACCTTTCATCAGGAAGACTGAAGTAGCTGCTATTTGTTTTGGTAGCTCGTCCTCGTATGTGCTGCTGATCTTTCGAAGAGCAATAAATTAAGTAAAGATTCAGCTTTGGGAGGCCCTTTTAACTCCGCAGTTTGCCCGACTGTCACAGTGCATCCTTTTACGGTATATTTTCTATCCAAGTGTTTGTTACACTGGCACTGACAGAGGACTGAGCAGGGGGCGTTCTGGACGACGAAAGTTAAGACAAACCGCTGTTCATCAAATATGGCAAATTGCTTTTAGACGTTCTTGCTGAGAagcagtatatttaaaaaaaaataaaaatcaccagCAGCAAGACGTTCTTATCTGCGCAGCATACTTCACAAGGGACTACATAACCTTTCAACTACTTCTATAATTCTTCATGTCACCCATAATGGGAGGACCACTAGGACCAAGACATCAGAGATCCAGCAGATACCCTCAGTGGCGGGGAATTTCTCCTTGGTCTCTTCCAAAGCAAGTACCAGAGTATTTTCTGCCTCGCTTCCCTTGCCCTGCTCAGTGCAGTACATTCCCCTGAGAGAGGTTACCCAGAGCAATACTCGCAGTCTCGATGAGAAGTCGAAGATGCTCAATGACATCCCCAGTCCTACAGCGCGGTTTTGGGGTGAGAGggattttaataacattatcTCCGTGGTAACTTTAACACTGTACGTTGGCATCTCCCAACTAAAGCgttataaatatttcaagtcCTTTTCTGTAACAGCACTTGTCTTTTATTATTCAGGAGCTGGGTTCGTTCATATTAAATAAGGTTCTCAGGGATAGTGAGAGGTAATTAAAGGGAACTCGtgtattgtaatttgtattccACTCGATGTCCTTGAACTCCAGTTAAGGAATTAAGAATTGTTTACACTTGTATGTGAAATGTAacgaaacaaataaaacatggaagGCGTGGGAGTTTGCTCTTCCTGTGCCAAATCGGGGTGGGATTTAACAAAACCcatggtattttttttgtatagcttGAAGAAATGTGAACAAATCCTCGTATCATGATTTGTCTGTGACTTCCAATAGGCTAAGAGATTCAAACTGACAGAGTACACAGTTGACCTGTGGTGTATTACATACTGTTTCCAAATGTACTGACAGTAACTTTCCTCCACAAGTAGCTTCTTCACCTGTTGTCTTTATTGATTTGCCGTTTTTCTTTGTAGTGACCCATGTACAGTCATGCACTAGAGGAATACGGAGAGGTATGAATTACATTATGCATTAAAGCAATGCACTGTTATATTCCAAAGGTTTCCAAACGCTAGGAAGTTATCACAATAATGCCAAGAAGTCAGTTTTGcctttgttttaactgttttagcCATATGTACAGTTCTGCCCCTAACAAGAAGACCTCAGAAATAAAggctaaacatttaaatgaa

Function

GO:

id name namespace
GO:0045454 cell redox homeostasis biological_process
GO:0006662 glycerol ether metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0015035 protein disulfide oxidoreductase activity molecular_function
GO:0016853 isomerase activity molecular_function

KEGG:

id description
K09583 PDIA5; protein disulfide-isomerase A5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158684 lncRNA downstream 18921 5116054 ~ 5119036 (-) True G126563
TU158674 lncRNA downstream 103260 5013868 ~ 5034697 (-) True G126554
TU158667 lncRNA downstream 175427 4957138 ~ 4962530 (-) False AMCG00000838
TU158563 lncRNA downstream 360173 4773581 ~ 4777784 (-) True G126476
TU158766 lncRNA upstream 197839 5372249 ~ 5372459 (-) True G126631
TU158803 lncRNA upstream 288157 5462567 ~ 5464052 (-) True G126665
TU158854 lncRNA upstream 395534 5569944 ~ 5572133 (-) True G126698
TU158942 lncRNA upstream 768976 5943386 ~ 5949894 (-) True G126767
TU159089 lncRNA upstream 1160303 6334713 ~ 6335866 (-) True G126873
AMCG00000842 mRNA downstream 5113 5121107 ~ 5132844 (-) True AMCG00000842
AMCG00000839 mRNA downstream 113066 5014369 ~ 5024891 (-) True AMCG00000839
AMCG00000838 mRNA downstream 155306 4957139 ~ 4982651 (-) True AMCG00000838
AMCG00000835 mRNA downstream 183783 4944217 ~ 4954174 (-) True AMCG00000835
AMCG00000836 mRNA downstream 199169 4864200 ~ 4938788 (-) True AMCG00000836
AMCG00000846 mRNA upstream 105134 5279544 ~ 5316096 (-) True AMCG00000846
AMCG00000854 mRNA upstream 179976 5354386 ~ 5370155 (-) True AMCG00000854
AMCG00000852 mRNA upstream 206730 5381140 ~ 5391829 (-) True AMCG00000852
AMCG00000850 mRNA upstream 218192 5392602 ~ 5396386 (-) True AMCG00000850
AMCG00000851 mRNA upstream 265620 5440030 ~ 5446252 (-) True AMCG00000851
TU158503 other downstream 501441 4636096 ~ 4636516 (-) True G126427
TU158313 other downstream 1481396 3652657 ~ 3656561 (-) False AMCG00000804
TU158094 other downstream 1988705 3131714 ~ 3149252 (-) True G126096
TU158093 other downstream 2004140 3131714 ~ 3133817 (-) False G126096
TU158081 other downstream 2088006 3044257 ~ 3049951 (-) True AMCG00000771
TU158856 other upstream 398295 5572705 ~ 5573027 (-) True G126700
TU159187 other upstream 1537548 6711958 ~ 6733817 (-) False AMCG00000888
TU159288 other upstream 2455505 7629915 ~ 7645722 (-) True G127039
TU159607 other upstream 4244586 9418996 ~ 9419325 (-) True G127292
TU159787 other upstream 5100277 10274687 ~ 10278211 (-) True G127443

Expression Profile